Reproducible research in Machine Learning has seen a salutary abundance of progress lately: workflows, transparency, and statistical analysis of validation and test performance. We build on these efforts and take them further. We offer a principled experimental design methodology, based on linear mixed models, to study and separate the effects of multiple factors of variation in machine learning experiments. This approach allows to account for the effects of architecture, optimizer, hyper-parameters, intentional randomization, as well as unintended lack of determinism across reruns. We illustrate that methodology by analyzing Matching Networks, Prototypical Networks and TADAM on the miniImagenet dataset.
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