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CREATe: Clinical Report Extraction and Annotation Technology

IEEE International Conference on Data Engineering (ICDE), 2021
28 February 2021
Yichao Zhou
Weiting Chen
Bowen Zhang
David A. Lee
J. H. Caufield
Kai-Wei Chang
Luke Huan
Peipei Ping
Wei Wang
ArXiv (abs)PDFHTML
Abstract

Clinical case reports are written descriptions of the unique aspects of a particular clinical case, playing an essential role in sharing clinical experiences about atypical disease phenotypes and new therapies. However, to our knowledge, there has been no attempt to develop an end-to-end system to annotate, index, or otherwise curate these reports. In this paper, we propose a novel computational resource platform, CREATe, for extracting, indexing, and querying the contents of clinical case reports. CREATe fosters an environment of sustainable resource support and discovery, enabling researchers to overcome the challenges of information science. An online video of the demonstration can be viewed at https://youtu.be/Q8owBQYTjDc.

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