UNETR: Transformers for 3D Medical Image Segmentation

18 March 2021

Andriy Myronenko

Papers citing "UNETR: Transformers for 3D Medical Image Segmentation"

50 / 588 papers shown

Title
Integration of Swin UNETR and statistical shape modeling for a semi-automated segmentation of the knee and biomechanical modeling of articular cartilage Reza Kakavand Mehrdad Palizi Peyman Tahghighi Reza Ahmadi Neha Gianchandani S. Adeeb Roberto Souza W. B. Edwards Amin Komeili 18 4 0 18 Sep 2023
CLIPUNetr: Assisting Human-robot Interface for Uncalibrated Visual Servoing Control with CLIP-driven Referring Expression Segmentation Chen Jiang Yuchen Yang Martin Jägersand 24 1 0 17 Sep 2023
Towards Safer Robot-Assisted Surgery: A Markerless Augmented Reality Framework Ziyang Chen Laura Cruciani Ke Fan Matteo Fontana E. Lievore O. de Cobelli G. Musi G. Ferrigno Elena De Momi 23 7 0 14 Sep 2023
UniBrain: Universal Brain MRI Diagnosis with Hierarchical Knowledge-enhanced Pre-training Jiayu Lei Lisong Dai Haoyun Jiang Chaoyi Wu Xiaoman Zhang ... Weidi Xie Yanyong Zhang Yuehua Li Ya-Qin Zhang Yanfeng Wang 13 10 0 13 Sep 2023
Multi-dimensional Fusion and Consistency for Semi-supervised Medical Image Segmentation Yixing Lu Zhaoxin Fan Min Xu 19 0 0 12 Sep 2023
Enhancing Hierarchical Transformers for Whole Brain Segmentation with Intracranial Measurements Integration Xin Yu Yucheng Tang Qi Yang Ho Hin Lee Shunxing Bao Yuankai Huo Bennett A. Landman 12 1 0 08 Sep 2023
SAM3D: Segment Anything Model in Volumetric Medical Images Nhat-Tan Bui Dinh-Hieu Hoang Minh-Triet Tran Gianfranco Doretto Donald Adjeroh Brijesh Patel Arabinda Choudhary Ngan Le MedIm 29 39 0 07 Sep 2023
Multi-dimension unified Swin Transformer for 3D Lesion Segmentation in Multiple Anatomical Locations Shaoyan Pan Yiqiao Liu Sarah Halek M. Tomaszewski Shubing Wang R. Baumgartner Jianda Yuan G. Goldmacher Antong Chen MedIm 19 1 0 04 Sep 2023
Leveraging Self-Supervised Vision Transformers for Segmentation-based Transfer Function Design Dominik Engel Leon Sick Timo Ropinski ViT 19 0 0 04 Sep 2023
Beyond Self-Attention: Deformable Large Kernel Attention for Medical Image Segmentation Reza Azad Leon Niggemeier Michael Huttemann A. Kazerouni Ehsan Khodapanah Aghdam Yury Velichko Ulas Bagci Dorit Merhof MedIm 24 57 0 31 Aug 2023
Laplacian-Former: Overcoming the Limitations of Vision Transformers in Local Texture Detection Reza Azad A. Kazerouni Babak Azad Ehsan Khodapanah Aghdam Yury Velichko Ulas Bagci Dorit Merhof ViT MedIm 11 16 0 31 Aug 2023
Towards Optimal Patch Size in Vision Transformers for Tumor Segmentation Ramtin Mojtahedi M. Hamghalam Richard K G Do Amber L. Simpson ViT MedIm 20 7 0 31 Aug 2023
Attention-based CT Scan Interpolation for Lesion Segmentation of Colorectal Liver Metastases M. Hamghalam Richard K G Do Amber L. Simpson MedIm 22 4 0 30 Aug 2023
AutoProSAM: Automated Prompting SAM for 3D Multi-Organ Segmentation Chengyin Li Prashant Khanduri Yao Qiang Rafi Ibn Sultan I. Chetty D. Zhu MedIm 67 13 0 28 Aug 2023
Transfer Learning for Microstructure Segmentation with CS-UNet: A Hybrid Algorithm with Transformer and CNN Encoders Khaled Alrfou Tian Zhao Amir Kordijazi ViT 16 3 0 26 Aug 2023
BHSD: A 3D Multi-Class Brain Hemorrhage Segmentation Dataset Biao Wu Yutong Xie Zeyu Zhang Jinchao Ge K. Yaxley Suzan Bahadir Qi Wu Yifan Liu Minh Nguyen Nhat To 11 23 0 22 Aug 2023
DOMINO++: Domain-aware Loss Regularization for Deep Learning Generalizability Skylar E. Stolte Kyle Volle A. Indahlastari Alejandro Albizu A. Woods Kevin Brink Matthew Hale R. Fang 6 2 0 21 Aug 2023
Learning Multiscale Consistency for Self-supervised Electron Microscopy Instance Segmentation Yinda Chen Wei Huang Xiaoyu Liu Shiyu Deng Qi Chen Zhiwei Xiong 40 20 0 19 Aug 2023
Can ultrasound confidence maps predict sonographers' labeling variability? Vanessa Gonzalez Duque Leonhard Zirus Yordanka Velikova Nassir Navab Diana Mateus 9 0 0 18 Aug 2023
Learning to In-paint: Domain Adaptive Shape Completion for 3D Organ Segmentation Mingjin Chen Yongkang He Yongyi Lu Zhi-Yi Yang MedIm 19 1 0 17 Aug 2023
Exploring Transfer Learning in Medical Image Segmentation using Vision-Language Models K. Poudel Manish Dhakal Prasiddha Bhandari Rabin Adhikari Safal Thapaliya Bishesh Khanal VLM 28 17 0 15 Aug 2023
CATS v2: Hybrid encoders for robust medical segmentation Hao Li Han Liu Dewei Hu Xing Yao Jiacheng Wang I. Oguz MedIm ViT 24 2 0 11 Aug 2023
AdaptiveSAM: Towards Efficient Tuning of SAM for Surgical Scene Segmentation Jay N. Paranjape Nithin Gopalakrishnan Nair S. Sikder S. Vedula Vishal M. Patel MedIm 23 38 0 07 Aug 2023
Microvasculature Segmentation in Human BioMolecular Atlas Program (HuBMAP) Youssef Sultan Yongqiang Wang J. Scanlon Lisa D'lima SSeg 20 0 0 06 Aug 2023
Boundary Difference Over Union Loss For Medical Image Segmentation F. Sun Zhiming Luo Shaozi Li 14 21 0 01 Aug 2023
3D Medical Image Segmentation with Sparse Annotation via Cross-Teaching between 3D and 2D Networks Heng Cai Lei Qi Qian Yu Yinghuan Shi Yang Gao 16 12 0 30 Jul 2023
ScribbleVC: Scribble-supervised Medical Image Segmentation with Vision-Class Embedding Zihan Li Yuan Zheng Xiangde Luo Dandan Shan Qingqi Hong 19 22 0 30 Jul 2023
Multi-layer Aggregation as a key to feature-based OOD detection Benjamin Lambert Florence Forbes Senan Doyle M. Dojat 30 5 0 28 Jul 2023
AViT: Adapting Vision Transformers for Small Skin Lesion Segmentation Datasets Siyi Du Nourhan Bayasi Ghassan Hamarneh Rafeef Garbi ViT 31 3 0 26 Jul 2023
Towards Unifying Anatomy Segmentation: Automated Generation of a Full-body CT Dataset via Knowledge Aggregation and Anatomical Guidelines A. Jaus C. Seibold Kelsey Hermann Alexandra Walter K. Giske Johannes Haubold Jens Kleesiek Rainer Stiefelhagen 28 19 0 25 Jul 2023
Spatiotemporal Modeling Encounters 3D Medical Image Analysis: Slice-Shift UNet with Multi-View Fusion C. Ugwu S. Casarin O. Lanz 19 0 0 24 Jul 2023
Semi-Supervised Medical Image Segmentation with Co-Distribution Alignment Tao Wang Zhongzheng Huang Jiawei Wu Yuanzheng Cai Zuoyong Li OOD 22 4 0 24 Jul 2023
SwinMM: Masked Multi-view with Swin Transformers for 3D Medical Image Segmentation Yiqing Wang Zihan Li Jieru Mei Zi-Ying Wei Li Liu Chen Wang Shengtian Sang Alan Yuille Cihang Xie Yuyin Zhou ViT MedIm 20 31 0 24 Jul 2023
SwIPE: Efficient and Robust Medical Image Segmentation with Implicit Patch Embeddings Yejia Zhang Pengfei Gu Nishchal Sapkota Da Chen 43 7 0 23 Jul 2023
Hybrid-CSR: Coupling Explicit and Implicit Shape Representation for Cortical Surface Reconstruction Shanlin Sun Thanh-Tung Le Chenyu You Hao Tang Kun Han Haoyu Ma Deying Kong Xiangyi Yan Xiaohui Xie 3DV 19 2 0 23 Jul 2023
Prototype-Driven and Multi-Expert Integrated Multi-Modal MR Brain Tumor Image Segmentation Yafei Zhang Zhiyuan Li Huafeng Li Dapeng Tao 17 1 0 22 Jul 2023
Pick the Best Pre-trained Model: Towards Transferability Estimation for Medical Image Segmentation Yuncheng Yang Meng Wei Junjun He J. Yang Jin Ye Yun Gu 30 6 0 22 Jul 2023
Revisiting Fine-Tuning Strategies for Self-supervised Medical Imaging Analysis Muhammad Osama Khan Yi Fang 25 3 0 20 Jul 2023
Frequency Domain Adversarial Training for Robust Volumetric Medical Segmentation Asif Hanif Muzammal Naseer Salman Khan M. Shah F. Khan AAML OOD 33 3 0 14 Jul 2023
3D Medical Image Segmentation based on multi-scale MPU-Net Zeqiu Yu Shuo Han Ziheng Song 3DV 11 3 0 11 Jul 2023
Ariadne's Thread:Using Text Prompts to Improve Segmentation of Infected Areas from Chest X-ray images Yishan Zhong Mengqiu Xu Kongming Liang Kaixin Chen Ming Wu 19 20 0 08 Jul 2023
AxonCallosumEM Dataset: Axon Semantic Segmentation of Whole Corpus Callosum cross section from EM Images Ao Cheng Guoqiang Zhao Lirong Wang Ruobing Zhang 17 3 0 05 Jul 2023
Synchronous Image-Label Diffusion Probability Model with Application to Stroke Lesion Segmentation on Non-contrast CT Jianhai Zhang Tonghua Wan Ethan MacDonald B. Menon A. Ganesh Qiu Wu DiffM MedIm 20 1 0 04 Jul 2023
H-DenseFormer: An Efficient Hybrid Densely Connected Transformer for Multimodal Tumor Segmentation Jun Shi Hongyu Kan Shulan Ruan Ziqi Zhu Minfan Zhao Liang Qiao Zhaohui Wang Hong An Xudong Xue ViT MedIm 11 2 0 04 Jul 2023
Transformers in Healthcare: A Survey Subhash Nerella S. Bandyopadhyay Jiaqing Zhang Miguel Contreras Scott Siegel ... Jessica Sena B. Shickel A. Bihorac Kia Khezeli Parisa Rashidi MedIm AI4CE 19 25 0 30 Jun 2023
MIS-FM: 3D Medical Image Segmentation using Foundation Models Pretrained on a Large-Scale Unannotated Dataset Guotai Wang Jianghao Wu Xiangde Luo Xinglong Liu Kang Li Shaoting Zhang 25 25 0 29 Jun 2023
CellViT: Vision Transformers for Precise Cell Segmentation and Classification Fabian Horst Moritz Rempe Lukas Heine C. Seibold J. Keyl ... S. Ugurel J. Siveke Barbara Grünwald Jan Egger Jens Kleesiek MedIm ViT 18 88 0 27 Jun 2023
LVM-Med: Learning Large-Scale Self-Supervised Vision Models for Medical Imaging via Second-order Graph Matching D. M. Nguyen Hoang Nguyen N. T. Diep Tan Ngoc Pham T. Cao ... Nhat Ho Shadi Albarqouni P. Xie Daniel Sonntag Mathias Niepert VLM MedIm 27 47 0 20 Jun 2023
Learnable Weight Initialization for Volumetric Medical Image Segmentation Shahina Kunhimon Abdelrahman M. Shaker Muzammal Naseer Salman Khan F. Khan 26 1 0 15 Jun 2023
Advancing Volumetric Medical Image Segmentation via Global-Local Masked Autoencoder Jiafan Zhuang Luyang Luo Hao Chen 22 11 0 15 Jun 2023