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A generalized forecasting solution to enable future insights of COVID-19 at sub-national level resolutions

21 August 2021
U. Marikkar
H. Weligampola
R. Perera
A. S. J. Hassan
Suren Sritharan
Gihan Chanaka Jayatilaka
R. Godaliyadda
V. Herath
Parakrama B. Ekanayake
Janaka Ekanayake
A. Rathnayake
S. Dharmaratne
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Abstract

COVID-19 continues to cause a significant impact on public health. To minimize this impact, policy makers undertake containment measures that however, when carried out disproportionately to the actual threat, as a result if errorneous threat assessment, cause undesirable long-term socio-economic complications. In addition, macro-level or national level decision making fails to consider the localized sensitivities in small regions. Hence, the need arises for region-wise threat assessments that provide insights on the behaviour of COVID-19 through time, enabled through accurate forecasts. In this study, a forecasting solution is proposed, to predict daily new cases of COVID-19 in regions small enough where containment measures could be locally implemented, by targeting three main shortcomings that exist in literature; the unreliability of existing data caused by inconsistent testing patterns in smaller regions, weak deploy-ability of forecasting models towards predicting cases in previously unseen regions, and model training biases caused by the imbalanced nature of data in COVID-19 epi-curves. Hence, the contributions of this study are three-fold; an optimized smoothing technique to smoothen less deterministic epi-curves based on epidemiological dynamics of that region, a Long-Short-Term-Memory (LSTM) based forecasting model trained using data from select regions to create a representative and diverse training set that maximizes deploy-ability in regions with lack of historical data, and an adaptive loss function whilst training to mitigate the data imbalances seen in epi-curves. The proposed smoothing technique, the generalized training strategy and the adaptive loss function largely increased the overall accuracy of the forecast, which enables efficient containment measures at a more localized micro-level.

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