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MONAI: An open-source framework for deep learning in healthcare

4 November 2022
M. Jorge Cardoso
Wenqi Li
Richard Brown
Nic Ma
E. Kerfoot
Yiheng Wang
Benjamin Murrey
Andriy Myronenko
Can Zhao
Dong Yang
V. Nath
Yufan He
Ziyue Xu
Ali Hatamizadeh
Andriy Myronenko
Wenjie Zhu
Yun-hui Liu
Mingxin Zheng
Yucheng Tang
Isaac Yang
Michael Zephyr
Behrooz Hashemian
Sachidanand Alle
Mohammad Zalbagi Darestani
C. Budd
Marc Modat
Tom Kamiel Magda Vercauteren
Guotai Wang
Yiwen Li
Yipeng Hu
Yunguan Fu
Benjamin L. Gorman
Hans J. Johnson
Brad W. Genereaux
B. S. Erdal
Vikash Gupta
A. Diaz-Pinto
Andre Dourson
Lena Maier-Hein
Paul F. Jaeger
Michael Baumgartner
Jayashree Kalpathy-Cramer
Mona G. Flores
J. Kirby
L. Cooper
H. Roth
Daguang Xu
David Bericat
R. Floca
S. Kevin Zhou
Haris Shuaib
Keyvan Farahani
Klaus H. Maier-Hein
S. Aylward
Prerna Dogra
Sebastien Ourselin
Andrew Feng
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Abstract

Artificial Intelligence (AI) is having a tremendous impact across most areas of science. Applications of AI in healthcare have the potential to improve our ability to detect, diagnose, prognose, and intervene on human disease. For AI models to be used clinically, they need to be made safe, reproducible and robust, and the underlying software framework must be aware of the particularities (e.g. geometry, physiology, physics) of medical data being processed. This work introduces MONAI, a freely available, community-supported, and consortium-led PyTorch-based framework for deep learning in healthcare. MONAI extends PyTorch to support medical data, with a particular focus on imaging, and provide purpose-specific AI model architectures, transformations and utilities that streamline the development and deployment of medical AI models. MONAI follows best practices for software-development, providing an easy-to-use, robust, well-documented, and well-tested software framework. MONAI preserves the simple, additive, and compositional approach of its underlying PyTorch libraries. MONAI is being used by and receiving contributions from research, clinical and industrial teams from around the world, who are pursuing applications spanning nearly every aspect of healthcare.

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