While computer vision has achieved tremendous success with multimodal encoding and direct textual interaction with images via chat-based large language models, similar advancements in medical imaging AI, particularly in 3D imaging, have been limited due to the scarcity of comprehensive datasets. To address this critical gap, we introduce CT-RATE, the first dataset that pairs 3D medical images with corresponding textual reports. CT-RATE comprises 25,692 non-contrast 3D chest CT scans from 21,304 unique patients. Through various reconstructions, these scans are expanded to 50,188 volumes, totaling over 14.3 million 2D slices. Each scan is accompanied by its corresponding radiology report. Leveraging CT-RATE, we develop CT-CLIP, a CT-focused contrastive language-image pretraining framework designed for broad applications without the need for task-specific training. We demonstrate how CT-CLIP can be used in two tasks: multi-abnormality detection and case retrieval. Remarkably, in multi-abnormality detection, CT-CLIP outperforms state-of-the-art fully supervised models across all key metrics, effectively eliminating the need for manual annotation. In case retrieval, it efficiently retrieves relevant cases using either image or textual queries, thereby enhancing knowledge dissemination. By combining CT-CLIP's vision encoder with a pretrained large language model, we create CT-CHAT, a vision-language foundational chat model for 3D chest CT volumes. Finetuned on over 2.7 million question-answer pairs derived from the CT-RATE dataset, CT-CHAT surpasses other multimodal AI assistants, underscoring the necessity for specialized methods in 3D medical imaging. Collectively, the open-source release of CT-RATE, CT-CLIP, and CT-CHAT not only addresses critical challenges in 3D medical imaging, but also lays the groundwork for future innovations in medical AI and improved patient care.
View on arXiv@article{hamamci2025_2403.17834,
title={ Developing Generalist Foundation Models from a Multimodal Dataset for 3D Computed Tomography },
author={ Ibrahim Ethem Hamamci and Sezgin Er and Chenyu Wang and Furkan Almas and Ayse Gulnihan Simsek and Sevval Nil Esirgun and Irem Doga and Omer Faruk Durugol and Weicheng Dai and Murong Xu and Muhammed Furkan Dasdelen and Bastian Wittmann and Tamaz Amiranashvili and Enis Simsar and Mehmet Simsar and Emine Bensu Erdemir and Abdullah Alanbay and Anjany Sekuboyina and Berkan Lafci and Christian Bluethgen and Kayhan Batmanghelich and Mehmet Kemal Ozdemir and Bjoern Menze },
journal={arXiv preprint arXiv:2403.17834},
year={ 2025 }
}