Testing conditional independence between two random vectors given a third is a fundamental and challenging problem in statistics, particularly in multivariate nonparametric settings due to the complexity of conditional structures. We propose a novel framework for testing conditional independence using transport maps. At the population level, we show that two well-defined transport maps can transform the conditional independence test into an unconditional independence test, this substantially simplifies the problem. These transport maps are estimated from data using conditional continuous normalizing flow models. Within this framework, we derive a test statistic and prove its consistency under both the null and alternative hypotheses. A permutation-based procedure is employed to evaluate the significance of the test. We validate the proposed method through extensive simulations and real-data analysis. Our numerical studies demonstrate the practical effectiveness of the proposed method for conditional independence testing.
View on arXiv@article{he2025_2504.09567,
title={ Conditional Independence Test Based on Transport Maps },
author={ Chenxuan He and Yuan Gao and Liping Zhu and Jian Huang },
journal={arXiv preprint arXiv:2504.09567},
year={ 2025 }
}