Deep Generative Model-Based Generation of Synthetic Individual-Specific Brain MRI Segmentations

To the best of our knowledge, all existing methods that can generate synthetic brain magnetic resonance imaging (MRI) scans for a specific individual require detailed structural or volumetric information about the individual's brain. However, such brain information is often scarce, expensive, and difficult to obtain. In this paper, we propose the first approach capable of generating synthetic brain MRI segmentations -- specifically, 3D white matter (WM), gray matter (GM), and cerebrospinal fluid (CSF) segmentations -- for individuals using their easily obtainable and often readily available demographic, interview, and cognitive test information. Our approach features a novel deep generative model, CSegSynth, which outperforms existing prominent generative models, including conditional variational autoencoder (C-VAE), conditional generative adversarial network (C-GAN), and conditional latent diffusion model (C-LDM). We demonstrate the high quality of our synthetic segmentations through extensive evaluations. Also, in assessing the effectiveness of the individual-specific generation, we achieve superior volume prediction, with mean absolute errors of only 36.44mL, 29.20mL, and 35.51mL between the ground-truth WM, GM, and CSF volumes of test individuals and those volumes predicted based on generated individual-specific segmentations, respectively.

@article{wang2025_2504.12352,
  title={ Deep Generative Model-Based Generation of Synthetic Individual-Specific Brain MRI Segmentations },
  author={ Ruijie Wang and Luca Rossetto and Susan Mérillat and Christina Röcke and Mike Martin and Abraham Bernstein },
  journal={arXiv preprint arXiv:2504.12352},
  year={ 2025 }
}