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An AI-native experimental laboratory for autonomous biomolecular engineering

3 July 2025
Mingyu Wu
Zhaoguo Wang
Jiabin Wang
Zhiyuan Dong
Jingkai Yang
Qingting Li
Tianyu Huang
Lei Zhao
Mingqiang Li
Fei Wang
Chunhai Fan
Haibo Chen
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Main:16 Pages
Abstract

Autonomous scientific research, capable of independently conducting complex experiments and serving non-specialists, represents a long-held aspiration. Achieving it requires a fundamental paradigm shift driven by artificial intelligence (AI). While autonomous experimental systems are emerging, they remain confined to areas featuring singular objectives and well-defined, simple experimental workflows, such as chemical synthesis and catalysis. We present an AI-native autonomous laboratory, targeting highly complex scientific experiments for applications like autonomous biomolecular engineering. This system autonomously manages instrumentation, formulates experiment-specific procedures and optimization heuristics, and concurrently serves multiple user requests. Founded on a co-design philosophy of models, experiments, and instruments, the platform supports the co-evolution of AI models and the automation system. This establishes an end-to-end, multi-user autonomous laboratory that handles complex, multi-objective experiments across diverse instrumentation. Our autonomous laboratory supports fundamental nucleic acid functions-including synthesis, transcription, amplification, and sequencing. It also enables applications in fields such as disease diagnostics, drug development, and information storage. Without human intervention, it autonomously optimizes experimental performance to match state-of-the-art results achieved by human scientists. In multi-user scenarios, the platform significantly improves instrument utilization and experimental efficiency. This platform paves the way for advanced biomaterials research to overcome dependencies on experts and resource barriers, establishing a blueprint for science-as-a-service at scale.

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@article{wu2025_2507.02379,
  title={ An AI-native experimental laboratory for autonomous biomolecular engineering },
  author={ Mingyu Wu and Zhaoguo Wang and Jiabin Wang and Zhiyuan Dong and Jingkai Yang and Qingting Li and Tianyu Huang and Lei Zhao and Mingqiang Li and Fei Wang and Chunhai Fan and Haibo Chen },
  journal={arXiv preprint arXiv:2507.02379},
  year={ 2025 }
}
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