HARMONY: Hidden Activation Representations and Model Output-Aware Uncertainty Estimation for Vision-Language Models

The growing deployment of Vision-Language Models (VLMs) in high-stakes applications such as autonomous driving and assistive technologies for visually impaired individuals necessitates reliable mechanisms to assess the trustworthiness of their generation. Uncertainty Estimation (UE) plays a central role in quantifying the reliability of model outputs and reducing unsafe generations via selective prediction. In this regard, most existing probability-based UE approaches rely on output probability distributions, aggregating token probabilities into a single uncertainty score using predefined functions such as length-normalization. Another line of research leverages model hidden representations and trains MLP-based models to predict uncertainty. However, these methods often fail to capture the complex multimodal relationships between semantic and textual tokens and struggle to identify biased probabilities often influenced by language priors. Motivated by these observations, we propose a novel UE framework, HARMONY, that jointly leverages fused multimodal information in model activations and the output distribution of the VLM to determine the reliability of responses. The key hypothesis of our work is that both the model's internal belief in its visual understanding, captured by its hidden representations, and the produced token probabilities carry valuable reliability signals that can be jointly leveraged to improve UE performance, surpassing approaches that rely on only one of these components. Experimental results on three open-ended VQA benchmarks, A-OKVQA, VizWiz, and PathVQA, and three state-of-the-art VLMs, LLaVa-7b, LLaVA-13b and InstructBLIP demonstrate that our method consistently performs on par with or better than existing approaches, achieving up to 4\% improvement in AUROC, and 6\% in PRR, establishing new state of the art in uncertainty estimation for VLMs.