Lifting Biomolecular Data Acquisition
Eli N. Weinstein
Andrei Slabodkin
Mattia G. Gollub
Kerry Dobbs
Xiao-Bing Cui
Fang Zhang
Kristina Gurung
Elizabeth B. Wood
Main:7 Pages
3 Figures
Bibliography:4 Pages
Appendix:2 Pages
Abstract
One strategy to scale up ML-driven science is to increase wet lab experiments' information density. We present a method based on a neural extension of compressed sensing to function space. We measure the activity of multiple different molecules simultaneously, rather than individually. Then, we deconvolute the molecule-activity map during model training. Co-design of wet lab experiments and learning algorithms provably leads to orders-of-magnitude gains in information density. We demonstrate on antibodies and cell therapies.
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