Deep Learning in Bioinformatics

21 March 2016

Papers citing "Deep Learning in Bioinformatics"

50 / 91 papers shown

Title
Exploration of Hepatitis B Virus Infection Dynamics through Virology-Informed Neural Network: A Novel Artificial Intelligence Approach Bikram Das Rupchand Sutradhar D C Dalal 39 0 0 12 Mar 2025
DLSOM: A Deep learning-based strategy for liver cancer subtyping Fabio Zamio 70 0 0 15 Dec 2024
Integrating Secondary Structures Information into Triangular Spatial Relationships (TSR) for Advanced Protein Classification Poorya Khajouie Titli Sarkar Krishna Rauniyar Li Chen Wu Xu Vijay Raghavan 62 0 0 19 Nov 2024
Comprehensive benchmarking of large language models for RNA secondary structure prediction L. I. Zablocki L. A. Bugnon M. Gerard L. Di Persia G. Stegmayer D. H. Milone AI4TS 23 3 0 21 Oct 2024
OmniGenBench: Automating Large-scale in-silico Benchmarking for Genomic Foundation Models Heng Yang Jack Cole Ke Li 18 0 0 02 Oct 2024
A Systematic Review of Intermediate Fusion in Multimodal Deep Learning for Biomedical Applications V. Guarrasi Fatih Aksu Camillo Maria Caruso Francesco Di Feola Aurora Rofena Filippo Ruffini Paolo Soda OffRL MedIm AI4CE 20 12 0 02 Aug 2024
Deep Positive-Unlabeled Anomaly Detection for Contaminated Unlabeled Data Hiroshi Takahashi Tomoharu Iwata Atsutoshi Kumagai Yuuki Yamanaka 35 1 0 29 May 2024
Exploring the Relationship: Transformative Adaptive Activation Functions in Comparison to Other Activation Functions Vladimír Kunc 10 1 0 14 Feb 2024
Predicting ATP binding sites in protein sequences using Deep Learning and Natural Language Processing Shreyas V Swati Agarwal 20 0 0 02 Feb 2024
Utilizing deep learning models for the identification of enhancers and super-enhancers based on genomic and epigenomic features Zahra Ahani Moein Shahiki Tash Yoel Ledo Mezquita Jason Angel 8 13 0 15 Jan 2024
Large Language Models in Plant Biology H. Lam Xing Er Ong Marek Mutwil 11 16 0 05 Jan 2024
Real-Time Diagnostic Integrity Meets Efficiency: A Novel Platform-Agnostic Architecture for Physiological Signal Compression Neel Vora Amir Hajighasemi Cody T. Reynolds Amir Radmehr Mohamed Mohamed ... Helen H Shang Jay Harvey Kan Ding Phuc Nguyen Jacob M. Luber 20 1 0 19 Dec 2023
Deep Learning in Computational Biology: Advancements, Challenges, and Future Outlook Suresh Kumar Dhanyashri Guruparan Pavithren Aaron Philemon Telajan Kavinesh Mahadevan Dinesh Davagandhi Ong Xin Yue AI4CE 19 6 0 02 Oct 2023
Label Denoising through Cross-Model Agreement Yu-Xiang Wang Xin Xin Zaiqiao Meng J. Jose Fuli Feng NoLa 13 1 0 27 Aug 2023
Physics-Informed Machine Learning of Argon Gas-Driven Melt Pool Dynamics Rahul Sharma Y.B. Guo M. Raissi W. Guo PINN AI4CE 37 5 0 23 Jul 2023
A Matrix Ensemble Kalman Filter-based Multi-arm Neural Network to Adequately Approximate Deep Neural Networks Ved Piyush Yuchen Yan Yuzhen Zhou Yanbin Yin Souparno Ghosh 25 0 0 19 Jul 2023
A Method for Detecting Murmurous Heart Sounds based on Self-similar Properties Dixon Vimalajeewa Chihoon Lee B. Vidakovic 8 2 0 28 May 2023
A One-Class Classifier for the Detection of GAN Manipulated Multi-Spectral Satellite Images Lydia Abady Giovanna Maria Dimitri Mauro Barni 30 3 0 19 May 2023
SemiGNN-PPI: Self-Ensembling Multi-Graph Neural Network for Efficient and Generalizable Protein-Protein Interaction Prediction Ziyuan Zhao Peisheng Qian Xulei Yang Zeng Zeng Cuntai Guan W. Tam Xiaoli Li 17 19 0 15 May 2023
Efficient Asynchronize Stochastic Gradient Algorithm with Structured Data Zhao-quan Song Mingquan Ye 22 4 0 13 May 2023
Divide-and-Conquer the NAS puzzle in Resource Constrained Federated Learning Systems Yeshwanth Venkatesha Youngeun Kim Hyoungseob Park Priyadarshini Panda FedML 11 3 0 11 May 2023
GPT-NAS: Evolutionary Neural Architecture Search with the Generative Pre-Trained Model Caiyang Yu Xianggen Liu Wentao Feng Yun Liu Wentao Feng Deng Xiong Chenwei Tang Jiancheng Lv 21 1 0 09 May 2023
Unpaired Image Translation to Mitigate Domain Shift in Liquid Argon Time Projection Chamber Detector Responses Y. Huang D. Torbunov B. Viren Haiwang Yu Jin-zhi Huang Meifeng Lin Yihui Ren OOD 22 0 0 25 Apr 2023
Optimization-Informed Neural Networks Da-Lin Wu A. Lisser 19 0 0 05 Oct 2022
Towards Fine-Dining Recipe Generation with Generative Pre-trained Transformers Konstantinos Katserelis Konstantinos Skianis 19 3 0 26 Sep 2022
A Survey on Generative Diffusion Model Hanqun Cao Cheng Tan Zhangyang Gao Yilun Xu Guangyong Chen Pheng-Ann Heng Stan Z. Li MedIm 37 206 0 06 Sep 2022
SIBILA: A novel interpretable ensemble of general-purpose machine learning models applied to medical contexts A. Banegas-Luna Horacio Pérez-Sánchez 20 1 0 12 May 2022
gLaSDI: Parametric Physics-informed Greedy Latent Space Dynamics Identification Xiaolong He Youngsoo Choi William D. Fries Jonathan Belof Jiun-Shyan Chen AI4CE 9 36 0 26 Apr 2022
Computer Vision and Deep Learning for Fish Classification in Underwater Habitats: A Survey Alzayat Saleh M. Sheaves M. R. Azghadi 21 71 0 14 Mar 2022
Deep Learning, Natural Language Processing, and Explainable Artificial Intelligence in the Biomedical Domain M. Moradi Matthias Samwald 46 7 0 25 Feb 2022
A Comprehensive Analytical Survey on Unsupervised and Semi-Supervised Graph Representation Learning Methods Md. Khaledur Rahman A. Azad AI4TS 22 3 0 20 Dec 2021
SLA $^2$ P: Self-supervised Anomaly Detection with Adversarial Perturbation Yizhou Wang Can Qin Rongzhe Wei Yi Tian Xu Yue Bai Y. Fu AAML 13 5 0 25 Nov 2021
Physics informed neural networks for continuum micromechanics Alexander Henkes Henning Wessels R. Mahnken PINN AI4CE 8 139 0 14 Oct 2021
Deep learning models are not robust against noise in clinical text M. Moradi Kathrin Blagec Matthias Samwald OOD 15 6 0 27 Aug 2021
Deep Algorithm Unrolling for Biomedical Imaging Yuelong Li Or Bar-Shira V. Monga Yonina C. Eldar SyDa 24 10 0 15 Aug 2021
TargetNet: Functional microRNA Target Prediction with Deep Neural Networks Seonwoo Min Byunghan Lee Sungroh Yoon 7 21 0 23 Jul 2021
Deep Metric Learning Model for Imbalanced Fault Diagnosis Xingtai Gui Jiyang Zhang 8 1 0 08 Jul 2021
Calibrating multi-dimensional complex ODE from noisy data via deep neural networks Kexuan Li Fangfang Wang Ruiqi Liu Fan Yang Zuofeng Shang 11 7 0 07 Jun 2021
Analysis of Vision-based Abnormal Red Blood Cell Classification Annika Wong Nantheera Anantrasirichai T. Chalidabhongse D. Palasuwan A. Palasuwan David Bull 12 11 0 01 Jun 2021
BridgeDPI: A Novel Graph Neural Network for Predicting Drug-Protein Interactions Yifan Wu Min Gao Min Zeng Feiyang Chen Min Li Jie Zhang 14 32 0 29 Jan 2021
Align-gram : Rethinking the Skip-gram Model for Protein Sequence Analysis Nabil Ibtehaz S. Sourav Md. Shamsuzzoha Bayzid M. S. Rahman 17 2 0 06 Dec 2020
Conditional canonical correlation estimation based on covariates with random forests Cansu Alakus Denis Larocque S. Jacquemont F. Barlaam Charles-Olivier Martin K. Agbogba S. Lippé A. Labbe CML 6 9 0 23 Nov 2020
Deep multi-modal networks for book genre classification based on its cover Chandra Kundu Lukun Zheng AI4TS 10 7 0 15 Nov 2020
Exploring Flip Flop memories and beyond: training recurrent neural networks with key insights C. Jarne 6 0 0 15 Oct 2020
A Unifying Review of Deep and Shallow Anomaly Detection Lukas Ruff Jacob R. Kauffmann Robert A. Vandermeulen G. Montavon Wojciech Samek Marius Kloft Thomas G. Dietterich Klaus-Robert Muller UQCV 18 779 0 24 Sep 2020
Investigation of REFINED CNN ensemble learning for anti-cancer drug sensitivity prediction Omid Bazgir Souparno Ghosh R. Pal MedIm 6 15 0 09 Sep 2020
NASirt: AutoML based learning with instance-level complexity information Habib Asseiss Neto Ronnie Cley de Oliveira Alves S. Campos 11 3 0 26 Aug 2020
Privacy-preserving Artificial Intelligence Techniques in Biomedicine Reihaneh Torkzadehmahani Reza Nasirigerdeh David B. Blumenthal T. Kacprowski M. List ... Harald H. H. W. Schmidt A. Schwalber Christof Tschohl Andrea Wohner Jan Baumbach 13 58 0 22 Jul 2020
EPGAT: Gene Essentiality Prediction With Graph Attention Networks João Schapke Anderson R. Tavares M. Recamonde‐Mendoza 9 20 0 19 Jul 2020
Deep learning for smart fish farming: applications, opportunities and challenges Xinting Yang Song Zhang Jintao Liu Qinfeng Gao S. Dong Chao Zhou AI4CE 17 233 0 06 Apr 2020