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CollaboNet: collaboration of deep neural networks for biomedical named
  entity recognition
v1v2 (latest)

CollaboNet: collaboration of deep neural networks for biomedical named entity recognition

21 September 2018
Wonjin Yoon
Chan Ho So
Jinhyuk Lee
Jaewoo Kang
ArXiv (abs)PDFHTML

Papers citing "CollaboNet: collaboration of deep neural networks for biomedical named entity recognition"

23 / 23 papers shown
MedicalBERT: enhancing biomedical natural language processing using pretrained BERT-based model
MedicalBERT: enhancing biomedical natural language processing using pretrained BERT-based model
K. Sahit Reddy
N. Ragavenderan
Vasanth K.
Ganesh N. Naik
Vishalakshi Prabhu
Nagaraja G. S
AI4MHLM&MA
207
1
0
06 Jul 2025
Cyber Attacks Prevention Towards Prosumer-based EV Charging Stations: An
  Edge-assisted Federated Prototype Knowledge Distillation Approach
Cyber Attacks Prevention Towards Prosumer-based EV Charging Stations: An Edge-assisted Federated Prototype Knowledge Distillation ApproachIEEE Transactions on Network and Service Management (TNSM), 2024
Luyao Zou
Quang Hieu Vo
Kitae Kim
Huy Q. Le
Chu Myaet Thwal
Chaoning Zhang
Choong Seon Hong
303
6
0
17 Oct 2024
A Biomedical Entity Extraction Pipeline for Oncology Health Records in
  Portuguese
A Biomedical Entity Extraction Pipeline for Oncology Health Records in PortugueseACM Symposium on Applied Computing (SAC), 2023
Hugo Sousa
Arian Pasquali
A. Jorge
Catarina Sousa Santos
Mário Amorim Lopes
95
3
0
18 Apr 2023
A Comparative Study of Pretrained Language Models for Long Clinical Text
A Comparative Study of Pretrained Language Models for Long Clinical Text
Yikuan Li
R. M. Wehbe
F. Ahmad
Hanyin Wang
Yuan Luo
LM&MAELMVLMMedIm
326
126
0
27 Jan 2023
Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu
  Framework
Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu FrameworkConference on Empirical Methods in Natural Language Processing (EMNLP), 2022
Wonjin Yoon
Richard Jackson
Elliot Ford
V. Poroshin
Jaewoo Kang
263
8
0
01 Dec 2022
Clinical-Longformer and Clinical-BigBird: Transformers for long clinical
  sequences
Clinical-Longformer and Clinical-BigBird: Transformers for long clinical sequences
Yikuan Li
R. M. Wehbe
F. Ahmad
Hanyin Wang
Yuan Luo
VLMMedIm
571
132
0
27 Jan 2022
The RareDis corpus: a corpus annotated with rare diseases, their signs
  and symptoms
The RareDis corpus: a corpus annotated with rare diseases, their signs and symptoms
Claudia Martínez-de Miguel
Isabel Segura-Bedmar
E. Chacón-Solano
S. Guerrero-Aspizua
162
27
0
02 Aug 2021
Sequence tagging for biomedical extractive question answering
Sequence tagging for biomedical extractive question answering
Wonjin Yoon
Richard Jackson
Aron Lagerberg
Jaewoo Kang
MedIm
283
31
0
15 Apr 2021
BERT: A Review of Applications in Natural Language Processing and
  Understanding
BERT: A Review of Applications in Natural Language Processing and Understanding
M. V. Koroteev
VLM
350
460
0
22 Mar 2021
How Do Your Biomedical Named Entity Recognition Models Generalize to
  Novel Entities?
How Do Your Biomedical Named Entity Recognition Models Generalize to Novel Entities?IEEE Access (IEEE Access), 2021
Hyunjae Kim
Jaewoo Kang
AI4CE
508
26
0
01 Jan 2021
Domain specific BERT representation for Named Entity Recognition of lab
  protocol
Domain specific BERT representation for Named Entity Recognition of lab protocol
Tejas Vaidhya
Ayush Kaushal
171
9
0
21 Dec 2020
COVIDScholar: An automated COVID-19 research aggregation and analysis
  platform
COVIDScholar: An automated COVID-19 research aggregation and analysis platform
Amalie Trewartha
John Dagdelen
Haoyan Huo
Kevin Cruse
Zheren Wang
...
Akshay Subramanian
Yuxing Fei
Benjamin Justus
Kristin A. Persson
Gerbrand Ceder
280
20
0
07 Dec 2020
BioNerFlair: biomedical named entity recognition using flair embedding
  and sequence tagger
BioNerFlair: biomedical named entity recognition using flair embedding and sequence tagger
Harsh Patel
173
8
0
03 Nov 2020
Analyzing the Effect of Multi-task Learning for Biomedical Named Entity
  Recognition
Analyzing the Effect of Multi-task Learning for Biomedical Named Entity Recognition
Arda Akdemir
T. Shibuya
153
4
0
01 Nov 2020
TweetBERT: A Pretrained Language Representation Model for Twitter Text
  Analysis
TweetBERT: A Pretrained Language Representation Model for Twitter Text Analysis
Mohiuddin Md Abdul Qudar
Vijay K. Mago
SSeg
256
43
0
17 Oct 2020
BioALBERT: A Simple and Effective Pre-trained Language Model for
  Biomedical Named Entity Recognition
BioALBERT: A Simple and Effective Pre-trained Language Model for Biomedical Named Entity RecognitionIEEE International Joint Conference on Neural Network (IJCNN), 2020
Usman Naseem
Matloob Khushi
V. Reddy
S. Rajendran
Imran Razzak
Jinman Kim
173
76
0
19 Sep 2020
Biomedical named entity recognition using BERT in the machine reading
  comprehension framework
Biomedical named entity recognition using BERT in the machine reading comprehension frameworkJournal of Biomedical Informatics (JBI), 2020
Cong Sun
Zhihao Yang
Lei Wang
Yin Zhang
Hongfei Lin
Jian Wang
269
117
0
03 Sep 2020
HunFlair: An Easy-to-Use Tool for State-of-the-Art Biomedical Named
  Entity Recognition
HunFlair: An Easy-to-Use Tool for State-of-the-Art Biomedical Named Entity Recognition
Leon Weber
Mario Sanger
Jannes Munchmeyer
Maryam Habibi
Ulf Leser
Alan Akbik
258
106
0
17 Aug 2020
DeepVar: An End-to-End Deep Learning Approach for Genomic Variant
  Recognition in Biomedical Literature
DeepVar: An End-to-End Deep Learning Approach for Genomic Variant Recognition in Biomedical Literature
Chaoran Cheng
Fei Tan
Zhi Wei
260
9
0
05 Jun 2020
Pre-trained Language Model for Biomedical Question Answering
Pre-trained Language Model for Biomedical Question Answering
Wonjin Yoon
Jinhyuk Lee
Donghyeon Kim
Minbyul Jeong
Jaewoo Kang
AI4MH
236
91
0
18 Sep 2019
Transfer Learning in Biomedical Natural Language Processing: An
  Evaluation of BERT and ELMo on Ten Benchmarking Datasets
Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets
Yifan Peng
Shankai Yan
Zhiyong Lu
LM&MAAI4MH
462
963
0
13 Jun 2019
SciBERT: A Pretrained Language Model for Scientific Text
SciBERT: A Pretrained Language Model for Scientific Text
Iz Beltagy
Kyle Lo
Arman Cohan
677
3,620
0
26 Mar 2019
BioBERT: a pre-trained biomedical language representation model for
  biomedical text mining
BioBERT: a pre-trained biomedical language representation model for biomedical text mining
Jinhyuk Lee
Wonjin Yoon
Sungdong Kim
Donghyeon Kim
Sunkyu Kim
Chan Ho So
Jaewoo Kang
OOD
2.1K
7,080
0
25 Jan 2019
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