Star-convex Polyhedra for 3D Object Detection and Segmentation in Microscopy

9 August 2019

Papers citing "Star-convex Polyhedra for 3D Object Detection and Segmentation in Microscopy"

37 / 37 papers shown

Title
Tiling artifacts and trade-offs of feature normalization in the segmentation of large biological images Elena Buglakova Anwai Archit Edoardo DÍmprima Julia Mahamid Constantin Pape Anna Kreshuk 36 0 0 25 Mar 2025
Geometric Framework for 3D Cell Segmentation Correction Peter Chen Bryan Chang Olivia Annette Creasey Julie Beth Sneddon Yining Liu 34 0 0 03 Feb 2025
Self-supervised Representation Learning for Cell Event Recognition through Time Arrow Prediction Cangxiong Chen Vinay P. Namboodiri Julia E. Sero 28 0 0 06 Nov 2024
3D Segmentation of Neuronal Nuclei and Cell-Type Identification using Multi-channel Information Antonio LaTorre Lidia Alonso-Nanclares J. Peña Javier De Felipe 22 3 0 04 Oct 2024
Multimodal Alignment of Histopathological Images Using Cell Segmentation and Point Set Matching for Integrative Cancer Analysis Jun Jiang Raymond Moore Brenna Novotny Leo Liu Zachary Fogarty Ray Guo Markovic Svetomir Chen Wang 30 0 0 30 Sep 2024
PNR: Physics-informed Neural Representation for high-resolution LFM reconstruction Jiayin Zhao Zhifeng Zhao Jiamin Wu Tao Yu Hui Qiao AI4CE 17 1 0 26 Sep 2024
Improving 3D deep learning segmentation with biophysically motivated cell synthesis Roman Bruch Mario Vitacolonna Elina Nurnberg Simeon Sauer Rüdiger Rudolf Markus Reischl 16 1 0 29 Aug 2024
Generalist Segmentation Algorithm for Photoreceptors Analysis in Adaptive Optics Imaging Mikhail Kulyabin Aline Sindel Hilde Pedersen Stuart Gilson R. Baraas Andreas K. Maier 20 1 0 27 Aug 2024
SR-CACO-2: A Dataset for Confocal Fluorescence Microscopy Image Super-Resolution Soufiane Belharbi Mara K M Whitford Phuong Hoang Shakeeb Murtaza Luke McCaffrey Eric Granger 33 0 0 13 Jun 2024
FISBe: A real-world benchmark dataset for instance segmentation of long-range thin filamentous structures Lisa Mais Peter Hirsch Claire Managan Ramya Kandarpa J. L. Rumberger Annika Reinke Lena Maier-Hein Gudrun Ihrke Dagmar Kainmueller 23 0 0 29 Mar 2024
ReStainGAN: Leveraging IHC to IF Stain Domain Translation for in-silico Data Generation Dominik Winter Nicolas Triltsch Philipp Plewa Marco Rosati T. Padel Ross Hill Markus Schick N. Brieu 16 2 0 11 Mar 2024
TriSAM: Tri-Plane SAM for zero-shot cortical blood vessel segmentation in VEM images Jia Wan Wanhua Li Jason Ken Adhinarta Atmadeep Banerjee Evelina Sjostedt Jingpeng Wu J. Lichtman Hanspeter Pfister D. Wei 26 6 0 25 Jan 2024
Morphological Profiling for Drug Discovery in the Era of Deep Learning Qiaosi Tang R. Ratnayake Gustavo Seabra Zhe Jiang Ruogu Fang ... Tamer Kahveci Jiang Bian Chenglong Li H. Luesch Yanjun Li 20 4 0 13 Dec 2023
Uncertainty Estimation in Instance Segmentation with Star-convex Shapes Qasim M. K. Siddiqui Sebastian Starke Peter Steinbach UQCV 20 0 0 19 Sep 2023
Predicting Ki67, ER, PR, and HER2 Statuses from H&E-stained Breast Cancer Images Amir Akbarnejad Nilanjan Ray P. Barnes G. Bigras 27 7 0 03 Aug 2023
AnyStar: Domain randomized universal star-convex 3D instance segmentation Neel Dey S. M. Abulnaga Benjamin Billot Esra Abaci Turk P. E. Grant Adrian V. Dalca Polina Golland MedIm 31 10 0 13 Jul 2023
Self-supervised dense representation learning for live-cell microscopy with time arrow prediction Benjamin Gallusser Max Stieber Martin Weigert 13 7 0 09 May 2023
Organelle-specific segmentation, spatial analysis, and visualization of volume electron microscopy datasets A. Müller Deborah Schmidt Lucas Rieckert M. Solimena Martin Weigert 9 3 0 07 Mar 2023
CellTranspose: Few-shot Domain Adaptation for Cellular Instance Segmentation M. Keaton Ram J. Zaveri Gianfranco Doretto 16 14 0 28 Dec 2022
μSplit: efficient image decomposition for microscopy data Ashesh Ashesh Alexander Krull M. D. Sante F. Pasqualini Florian Jug 26 4 0 23 Nov 2022
MMV_Im2Im: An Open Source Microscopy Machine Vision Toolbox for Image-to-Image Transformation Justin Sonneck Jianxu Chen VLM MedIm 17 5 0 06 Sep 2022
A Semi-automatic Cell Tracking Process Towards Completing the 4D Atlas of C. elegans Development Andrew Lauziere Ryan Christensen H. Shroff 14 1 0 27 Jul 2022
YOLO2U-Net: Detection-Guided 3D Instance Segmentation for Microscopy A. Ziabari Derek C. Rose A. Shirinifard D. Solecki 11 2 0 13 Jul 2022
EmbedTrack -- Simultaneous Cell Segmentation and Tracking Through Learning Offsets and Clustering Bandwidths Katharina Löffler Ralf Mikut 21 31 0 22 Apr 2022
ConsInstancy: Learning Instance Representations for Semi-Supervised Panoptic Segmentation of Concrete Aggregate Particles Max Coenen T. Schack D. Beyer Christian Heipke M. Haist ISeg 14 13 0 10 Apr 2022
Instance Segmentation of Unlabeled Modalities via Cyclic Segmentation GAN Leander Lauenburg Zudi Lin Ruihan Zhang Márcia dos Santos Siyu Huang Ignacio Arganda-Carreras E. Boyden Hanspeter Pfister D. Wei GAN MedIm 20 5 0 06 Apr 2022
Nuclei instance segmentation and classification in histopathology images with StarDist Martin Weigert Uwe Schmidt 11 49 0 03 Mar 2022
PyTorch Connectomics: A Scalable and Flexible Segmentation Framework for EM Connectomics Zudi Lin D. Wei J. Lichtman Hanspeter Pfister 24 22 0 10 Dec 2021
Multiple Hypothesis Hypergraph Tracking for Posture Identification in Embryonic Caenorhabditis elegans Andrew Lauziere Evan L Ardiel Stephen Xu H. Shroff VOT 11 1 0 11 Nov 2021
NucMM Dataset: 3D Neuronal Nuclei Instance Segmentation at Sub-Cubic Millimeter Scale Zudi Lin D. Wei M. Petkova Yuelong Wu Zergham Ahmed ... Nagaraju Dhanyasi Ignacio Arganda-Carreras F. Engert J. Lichtman Hanspeter Pfister 29 25 0 13 Jul 2021
Medical Image Segmentation with Limited Supervision: A Review of Deep Network Models Jialin Peng Ye Wang VLM 14 58 0 28 Feb 2021
Probabilistic Spatial Analysis in Quantitative Microscopy with Uncertainty-Aware Cell Detection using Deep Bayesian Regression of Density Maps Alvaro Gomariz Tiziano Portenier C. Nombela-Arrieta O. Goksel UQCV 11 6 0 23 Feb 2021
MultiStar: Instance Segmentation of Overlapping Objects with Star-Convex Polygons Florin C. Walter Sebastian Damrich Fred Hamprecht 10 14 0 26 Nov 2020
Spherical Harmonics for Shape-Constrained 3D Cell Segmentation Dennis Eschweiler Malte Rethwisch Simon Koppers Johannes Stegmaier 14 9 0 23 Oct 2020
RDCNet: Instance segmentation with a minimalist recurrent residual network Raphael Ortiz Gustavo de Medeiros A. Peters P. Liberali Markus Rempfler ISeg 14 3 0 02 Oct 2020
An Auxiliary Task for Learning Nuclei Segmentation in 3D Microscopy Images Peter Hirsch Dagmar Kainmueller 14 12 0 07 Feb 2020
PatchPerPix for Instance Segmentation Peter Hirsch Lisa Mais Dagmar Kainmueller 3DV ISeg 19 30 0 21 Jan 2020