Communities
Connect sessions
AI calendar
Organizations
Join Slack
Contact Sales
Search
Open menu
Home
Papers
1908.03636
Cited By
v1
v2 (latest)
Star-convex Polyhedra for 3D Object Detection and Segmentation in Microscopy
IEEE Workshop/Winter Conference on Applications of Computer Vision (WACV), 2019
9 August 2019
Martin Weigert
Uwe Schmidt
Robert Haase
Ko Sugawara
E. Myers
Re-assign community
ArXiv (abs)
PDF
HTML
Papers citing
"Star-convex Polyhedra for 3D Object Detection and Segmentation in Microscopy"
41 / 41 papers shown
A co-evolving agentic AI system for medical imaging analysis
Songhao Li
Jonathan Xu
Tiancheng Bao
Yuxuan Liu
Yuchen Liu
...
Yinuo Xu
Yan Cui
Jialu Yao
Shunsuke Koga
Zhi Huang
MedIm
198
3
0
24 Sep 2025
Intelligent Software System for Low-Cost, Brightfield Segmentation: Algorithmic Implementation for Cytometric Auto-Analysis
Surajit Das
Pavel Zun
166
0
0
14 Sep 2025
SurfDist: Interpretable Three-Dimensional Instance Segmentation Using Curved Surface Patches
Jackson Borchardt
Saul Kato
115
0
0
11 Jul 2025
Image-Based Method For Measuring And Classification Of Iron Ore Pellets Using Star-Convex Polygons
Artem Solomko
Oleg Kartashev
Andrey Golov
Mikhail Deulin
Vadim Valynkin
Vasily Kharin
210
0
0
10 Jun 2025
Reconceptualizing Smart Microscopy: From Data Collection to Knowledge Creation by Multi-Agent Integration
P.S. Kesavan
Pontus Nordenfelt
170
2
0
26 May 2025
Tiling artifacts and trade-offs of feature normalization in the segmentation of large biological images
Elena Buglakova
Anwai Archit
Edoardo DÍmprima
Julia Mahamid
Constantin Pape
Anna Kreshuk
254
4
0
25 Mar 2025
Self-supervised Representation Learning for Cell Event Recognition through Time Arrow Prediction
Cangxiong Chen
Vinay P. Namboodiri
Julia E. Sero
243
0
0
06 Nov 2024
3D Segmentation of Neuronal Nuclei and Cell-Type Identification using Multi-channel Information
Expert systems with applications (ESWA), 2021
Antonio LaTorre
Lidia Alonso-Nanclares
J. Peña
Javier De Felipe
233
3
0
04 Oct 2024
Multimodal Alignment of Histopathological Images Using Cell Segmentation and Point Set Matching for Integrative Cancer Analysis
Jun Jiang
Raymond Moore
Brenna Novotny
Leo Liu
Zachary Fogarty
Ray Guo
Markovic Svetomir
Chen Wang
186
1
0
30 Sep 2024
PNR: Physics-informed Neural Representation for high-resolution LFM reconstruction
Jiayin Zhao
Zhifeng Zhao
Jiamin Wu
Tao Yu
Hui Qiao
AI4CE
245
2
0
26 Sep 2024
Improving 3D deep learning segmentation with biophysically motivated cell synthesis
Communications Biology (Commun. Biol.), 2024
Roman Bruch
Mario Vitacolonna
Elina Nurnberg
Simeon Sauer
Rüdiger Rudolf
Markus Reischl
249
8
0
29 Aug 2024
Generalist Segmentation Algorithm for Photoreceptors Analysis in Adaptive Optics Imaging
International Conference on Pattern Recognition (ICPR), 2024
Mikhail Kulyabin
Aline Sindel
Hilde Pedersen
Stuart Gilson
R. Baraas
Andreas Maier
414
1
0
27 Aug 2024
SR-CACO-2: A Dataset for Confocal Fluorescence Microscopy Image Super-Resolution
Soufiane Belharbi
Mara K M Whitford
Phuong Hoang
Shakeeb Murtaza
Luke McCaffrey
Eric Granger
254
4
0
13 Jun 2024
FISBe: A real-world benchmark dataset for instance segmentation of long-range thin filamentous structures
Lisa Mais
Peter Hirsch
Claire Managan
Ramya Kandarpa
J. L. Rumberger
Annika Reinke
Lena Maier-Hein
Gudrun Ihrke
Dagmar Kainmueller
196
0
0
29 Mar 2024
ReStainGAN: Leveraging IHC to IF Stain Domain Translation for in-silico Data Generation
Dominik Winter
Nicolas Triltsch
Philipp Plewa
Marco Rosati
T. Padel
Ross Hill
Markus Schick
N. Brieu
182
3
0
11 Mar 2024
TriSAM: Tri-Plane SAM for zero-shot cortical blood vessel segmentation in VEM images
IEEE journal of biomedical and health informatics (IEEE JBHI), 2024
Jia Wan
Wanhua Li
Jason Ken Adhinarta
Atmadeep Banerjee
Evelina Sjostedt
Jingpeng Wu
J. Lichtman
Hanspeter Pfister
D. Wei
403
10
0
25 Jan 2024
Morphological Profiling for Drug Discovery in the Era of Deep Learning
Qiaosi Tang
R. Ratnayake
Gustavo Seabra
Zhe Jiang
Ruogu Fang
...
Tamer Kahveci
Jiang Bian
Chenglong Li
H. Luesch
Yanjun Li
307
13
0
13 Dec 2023
Uncertainty Estimation in Instance Segmentation with Star-convex Shapes
IEEE Workshop/Winter Conference on Applications of Computer Vision (WACV), 2023
Qasim M. K. Siddiqui
Sebastian Starke
Peter Steinbach
UQCV
233
2
0
19 Sep 2023
Predicting Ki67, ER, PR, and HER2 Statuses from H&E-stained Breast Cancer Images
Amir Akbarnejad
Nilanjan Ray
P. Barnes
G. Bigras
363
17
0
03 Aug 2023
AnyStar: Domain randomized universal star-convex 3D instance segmentation
IEEE Workshop/Winter Conference on Applications of Computer Vision (WACV), 2023
Neel Dey
S. M. Abulnaga
Benjamin Billot
Esra Abaci Turk
P. E. Grant
Adrian Dalca
Polina Golland
MedIm
374
19
0
13 Jul 2023
Self-supervised dense representation learning for live-cell microscopy with time arrow prediction
International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2023
Benjamin Gallusser
Max Stieber
Martin Weigert
359
11
0
09 May 2023
Organelle-specific segmentation, spatial analysis, and visualization of volume electron microscopy datasets
A. Müller
Deborah Schmidt
Lucas Rieckert
M. Solimena
Martin Weigert
247
3
0
07 Mar 2023
CellTranspose: Few-shot Domain Adaptation for Cellular Instance Segmentation
IEEE Workshop/Winter Conference on Applications of Computer Vision (WACV), 2022
M. Keaton
Ram J. Zaveri
Gianfranco Doretto
290
16
0
28 Dec 2022
μSplit: efficient image decomposition for microscopy data
IEEE International Conference on Computer Vision (ICCV), 2022
Ashesh Ashesh
Alexander Krull
M. D. Sante
F. Pasqualini
Florian Jug
382
8
0
23 Nov 2022
MMV_Im2Im: An Open Source Microscopy Machine Vision Toolbox for Image-to-Image Transformation
GigaScience (GigaScience), 2022
Justin Sonneck
Jianxu Chen
VLM
MedIm
275
5
0
06 Sep 2022
A Semi-automatic Cell Tracking Process Towards Completing the 4D Atlas of C. elegans Development
Andrew Lauziere
Ryan Christensen
H. Shroff
207
1
0
27 Jul 2022
YOLO2U-Net: Detection-Guided 3D Instance Segmentation for Microscopy
Pattern Recognition Letters (PRL), 2022
A. Ziabari
Derek C. Rose
A. Shirinifard
D. Solecki
297
5
0
13 Jul 2022
EmbedTrack -- Simultaneous Cell Segmentation and Tracking Through Learning Offsets and Clustering Bandwidths
IEEE Access (IEEE Access), 2022
Katharina Löffler
Ralf Mikut
193
39
0
22 Apr 2022
ConsInstancy: Learning Instance Representations for Semi-Supervised Panoptic Segmentation of Concrete Aggregate Particles
Machine Vision and Applications (MVA), 2022
Max Coenen
T. Schack
D. Beyer
Christian Heipke
M. Haist
ISeg
315
15
0
10 Apr 2022
Instance Segmentation of Unlabeled Modalities via Cyclic Segmentation GAN
Leander Lauenburg
Zudi Lin
Ruihan Zhang
Márcia dos Santos
Siyu Huang
Ignacio Arganda-Carreras
E. Boyden
Hanspeter Pfister
D. Wei
GAN
MedIm
171
5
0
06 Apr 2022
Nuclei instance segmentation and classification in histopathology images with StarDist
Martin Weigert
Uwe Schmidt
330
147
0
03 Mar 2022
PyTorch Connectomics: A Scalable and Flexible Segmentation Framework for EM Connectomics
Zudi Lin
D. Wei
J. Lichtman
Hanspeter Pfister
180
31
0
10 Dec 2021
Multiple Hypothesis Hypergraph Tracking for Posture Identification in Embryonic Caenorhabditis elegans
Andrew Lauziere
Evan L Ardiel
Stephen Xu
H. Shroff
VOT
267
1
0
11 Nov 2021
NucMM Dataset: 3D Neuronal Nuclei Instance Segmentation at Sub-Cubic Millimeter Scale
Zudi Lin
D. Wei
M. Petkova
Yuelong Wu
Zergham Ahmed
...
Nagaraju Dhanyasi
Ignacio Arganda-Carreras
F. Engert
J. Lichtman
Hanspeter Pfister
251
34
0
13 Jul 2021
Medical Image Segmentation with Limited Supervision: A Review of Deep Network Models
IEEE Access (IEEE Access), 2021
Jialin Peng
Ye Wang
VLM
251
82
0
28 Feb 2021
Probabilistic Spatial Analysis in Quantitative Microscopy with Uncertainty-Aware Cell Detection using Deep Bayesian Regression of Density Maps
Science Advances (Sci Adv), 2021
Alvaro Gomariz
Tiziano Portenier
C. Nombela-Arrieta
O. Goksel
UQCV
189
10
0
23 Feb 2021
MultiStar: Instance Segmentation of Overlapping Objects with Star-Convex Polygons
IEEE International Symposium on Biomedical Imaging (ISBI), 2020
Florin C. Walter
Sebastian Damrich
Fred Hamprecht
297
18
0
26 Nov 2020
Spherical Harmonics for Shape-Constrained 3D Cell Segmentation
IEEE International Symposium on Biomedical Imaging (ISBI), 2020
Dennis Eschweiler
Malte Rethwisch
Simon Koppers
Johannes Stegmaier
153
9
0
23 Oct 2020
RDCNet: Instance segmentation with a minimalist recurrent residual network
Raphael Ortiz
Gustavo de Medeiros
A. Peters
P. Liberali
Markus Rempfler
ISeg
319
4
0
02 Oct 2020
An Auxiliary Task for Learning Nuclei Segmentation in 3D Microscopy Images
International Conference on Medical Imaging with Deep Learning (MIDL), 2020
Peter Hirsch
Dagmar Kainmueller
285
14
0
07 Feb 2020
PatchPerPix for Instance Segmentation
European Conference on Computer Vision (ECCV), 2020
Peter Hirsch
Lisa Mais
Dagmar Kainmueller
3DV
ISeg
433
31
0
21 Jan 2020
1
Page 1 of 1
