Deep Learning for Whole Slide Image Analysis: An Overview

18 October 2019

Papers citing "Deep Learning for Whole Slide Image Analysis: An Overview"

50 / 51 papers shown

Title
Identifying regions of interest in whole slide images of renal cell carcinoma Mohammed Lamine Benomar Nesma Settouti Eric Debreuve Xavier Descombes Damien Ambrosetti 35 0 0 09 Apr 2025
A Prototype-Guided Coarse Annotations Refining Approach for Whole Slide Images Bingjian Yao Weiping Lin Yan He Zheng Wang Liangsheng Wang 37 0 0 25 Mar 2025
PATHS: A Hierarchical Transformer for Efficient Whole Slide Image Analysis Zak Buzzard Konstantin Hemker Nikola Simidjievski M. Jamnik MedIm 61 0 0 27 Nov 2024
Clustered Patch Embeddings for Permutation-Invariant Classification of Whole Slide Images R. Gupta Shounak Das Amit Sethi 23 0 0 13 Nov 2024
Efficient Whole Slide Image Classification through Fisher Vector Representation R. Gupta Dadi Dharani Shambhavi Shanker Amit Sethi 34 0 0 13 Nov 2024
Multi-Cohort Framework with Cohort-Aware Attention and Adversarial Mutual-Information Minimization for Whole Slide Image Classification Sharon Peled Y. Maruvka Moti Freiman 28 1 0 17 Sep 2024
IBO: Inpainting-Based Occlusion to Enhance Explainable Artificial Intelligence Evaluation in Histopathology Pardis Afshar Sajjad Hashembeiki Pouya Khani Emad Fatemizadeh M. Rohban 26 4 0 29 Aug 2024
Pan-cancer Histopathology WSI Pre-training with Position-aware Masked Autoencoder Kun-Hsuan Wu Zhiguo Jiang Kunming Tang Jun Shi Fengying Xie Wei Wang Haibo Wu Yushan Zheng 30 1 0 10 Jul 2024
IHC Matters: Incorporating IHC analysis to H&E Whole Slide Image Analysis for Improved Cancer Grading via Two-stage Multimodal Bilinear Pooling Fusion Jun Wang Yu Mao Yufei Cui Nan Guan Chun Jason Xue 24 1 0 13 May 2024
PD-L1 Classification of Weakly-Labeled Whole Slide Images of Breast Cancer Giacomo Cignoni C. Scatena Chiara Frascarelli N. Fusco A. Naccarato G. Fanelli Alina Sirbu 33 0 0 15 Apr 2024
Focused Active Learning for Histopathological Image Classification Arne Schmidt Pablo Morales-Álvarez Lee A.D. Cooper L. Newberg A. Enquobahrie Aggelos K. Katsaggelos Rafael Molina 32 6 0 06 Apr 2024
Finding Regions of Interest in Whole Slide Images Using Multiple Instance Learning Martim Afonso Praphulla M. S. Bhawsar Monjoy Saha Jonas S. Almeida Arlindo L. Oliveira 18 0 0 01 Apr 2024
Towards Large-Scale Training of Pathology Foundation Models kaiko.ai N. Aben Edwin D. de Jong Ioannis Gatopoulos Nicolas Kanzig Mikhail Karasikov Axel Lagré Roman Moser J. Doorn Fei Tang MedIm AI4CE 37 9 0 24 Mar 2024
Seeing the random forest through the decision trees. Supporting learning health systems from histopathology with machine learning models: Challenges and opportunities Ricardo Gonzalez Ashirbani Saha Clinton J.V. Campbell Peyman Nejat Cynthia Lokker Andrew P. Norgan 41 13 0 06 Dec 2023
A transductive few-shot learning approach for classification of digital histopathological slides from liver cancer Aymen Sadraoui Ségolène Martin Eliott Barbot A. Laurent-Bellue J. Pesquet Catherine Guettier Ismail Ben Ayed MedIm 27 2 0 29 Nov 2023
Semi-supervised ViT knowledge distillation network with style transfer normalization for colorectal liver metastases survival prediction Mohamed El Amine Elforaici E. Montagnon Francisco Perdigon Romero W. Le F. Azzi Dominique Trudel Bich Nguyen Simon Turcotte An Tang Samuel Kadoury MedIm 33 2 0 17 Nov 2023
Creating an Atlas of Normal Tissue for Pruning WSI Patching Through Anomaly Detection Peyman Nejat Areej Alsaafin Ghazal Alabtah N. Comfere Aaron Mangold Dennis Murphree P. Zot Saba Yasir Joaquin J. Garcia H. R. Tizhoosh 12 1 0 04 Oct 2023
TPMIL: Trainable Prototype Enhanced Multiple Instance Learning for Whole Slide Image Classification Litao Yang Deval Mehta Sidong Liu Dwarikanath Mahapatra A. Di Ieva Zongyuan Ge 29 5 0 01 May 2023
Exploring shared memory architectures for end-to-end gigapixel deep learning Lucas W. Remedios L. Cai Samuel W. Remedios Karthik Ramadass Aravind Krishnan ... C. Cui Shunxing Bao Lori A. Coburn Yuankai Huo Bennett A. Landman MedIm VLM 41 0 0 24 Apr 2023
PathRTM: Real-time prediction of KI-67 and tumor-infiltrated lymphocytes Steven Lapp E. David N. Netanyahu 16 2 0 23 Apr 2023
Masked Pre-Training of Transformers for Histology Image Analysis Shuai Jiang Liesbeth Hondelink A. Suriawinata Saeed Hassanpour MedIm 26 14 0 14 Apr 2023
Cross-scale Multi-instance Learning for Pathological Image Diagnosis Ruining Deng Can Cui Lucas W. Remedios Shunxing Bao R. M. Womick ... Keith T. Wilson Yaohong Wang Lori A. Coburn Bennett A. Landman Yuankai Huo 21 8 0 01 Apr 2023
Diagnose Like a Pathologist: Transformer-Enabled Hierarchical Attention-Guided Multiple Instance Learning for Whole Slide Image Classification Conghao Xiong Hao Chen Joseph J. Y. Sung Irwin King MedIm 21 36 0 19 Jan 2023
MGTUNet: An new UNet for colon nuclei instance segmentation and quantification Liangrui Pan Lian-min Wang Mingting Liu Zhujun Xu Liwen Xu Shaoliang Peng 29 2 0 20 Oct 2022
Learning Binary and Sparse Permutation-Invariant Representations for Fast and Memory Efficient Whole Slide Image Search S. Hemati Shivam Kalra Morteza Babaie H. R. Tizhoosh 24 10 0 29 Aug 2022
Cross-scale Attention Guided Multi-instance Learning for Crohn's Disease Diagnosis with Pathological Images Ruining Deng C. Cui Lucas W. Remedios Shunxing Bao R. M. Womick ... K. Wilson Yao Wang Lori A. Coburn Bennett A. Landman Yuankai Huo 31 10 0 15 Aug 2022
Efficient High-Resolution Deep Learning: A Survey Arian Bakhtiarnia Qi Zhang Alexandros Iosifidis MedIm 21 19 0 26 Jul 2022
Gigapixel Whole-Slide Images Classification using Locally Supervised Learning Jingwei Zhang Xin Zhang Ke Ma Rajarsi R. Gupta Joel H. Saltz Maria Vakalopoulou Dimitris Samaras 24 24 0 17 Jul 2022
Stain Based Contrastive Co-training for Histopathological Image Analysis Bodong Zhang Beatrice S. Knudsen Deepika Sirohi Alessandro Ferrero Tolga Tasdizen SSL 23 5 0 24 Jun 2022
Feature Re-calibration based Multiple Instance Learning for Whole Slide Image Classification Philip Chikontwe S. Nam H. Go Meejeong Kim H. Sung Sang Hyun Park 14 20 0 22 Jun 2022
FHIST: A Benchmark for Few-shot Classification of Histological Images Fereshteh Shakeri Malik Boudiaf S. Mohammadi Ivaxi Sheth Mohammad Havaei Ismail Ben Ayed Samira Ebrahimi Kahou OOD VLM 30 21 0 31 May 2022
Preparing data for pathological artificial intelligence with clinical-grade performance Yuanqing Yang K. Sun Yanhua Gao Kuang-Heng Wang Gang Yu OOD 32 1 0 22 May 2022
Evaluation of Multi-Scale Multiple Instance Learning to Improve Thyroid Cancer Classification M. Tschuchnig Philipp Grubmüller Lea Maria Stangassinger Christina Kreutzer S. Couillard-Després G. Oostingh Anton Hittmair M. Gadermayr 13 7 0 22 Apr 2022
From Modern CNNs to Vision Transformers: Assessing the Performance, Robustness, and Classification Strategies of Deep Learning Models in Histopathology Maximilian Springenberg A. Frommholz M. Wenzel Eva Weicken Jackie Ma Nils Strodthoff MedIm 27 42 0 11 Apr 2022
Deep Learning-Based Sparse Whole-Slide Image Analysis for the Diagnosis of Gastric Intestinal Metaplasia Jon Braatz Pranav Rajpurkar Stephanie Zhang A. Ng Jeanne Shen 13 4 0 05 Jan 2022
Towards Launching AI Algorithms for Cellular Pathology into Clinical & Pharmaceutical Orbits Amina Asif K. Rajpoot David R. J. Snead F. Minhas Nasir M. Rajpoot 19 5 0 17 Dec 2021
Magnifying Networks for Images with Billions of Pixels Neofytos Dimitriou Ognjen Arandjelovic 21 2 0 12 Dec 2021
PIMIP: An Open Source Platform for Pathology Information Management and Integration Jialun Wu Anyu Mao Xinrui Bao Haichuan Zhang Zeyu Gao Chunbao Wang Tieliang Gong Chen Li 22 3 0 09 Nov 2021
Pay Attention with Focus: A Novel Learning Scheme for Classification of Whole Slide Images Shivam Kalra Mohammed Adnan S. Hemati Taher Dehkharghanian Shahryar Rahnamayan Hamid Tizhoosh 18 12 0 11 Jun 2021
Conditional Deep Convolutional Neural Networks for Improving the Automated Screening of Histopathological Images Gianluca Gerard M. Piastra OOD MedIm 11 2 0 29 May 2021
A Comprehensive Review of Computer-aided Whole-slide Image Analysis: from Datasets to Feature Extraction, Segmentation, Classification, and Detection Approaches Chen Li Xintong Li M. Rahaman Xirong Li Hongzan Sun ... Yong Zhang Xiaoqi Li Jian Wu Yudong Yao M. Grzegorzek 33 191 0 21 Feb 2021
Frozen-to-Paraffin: Categorization of Histological Frozen Sections by the Aid of Paraffin Sections and Generative Adversarial Networks M. Gadermayr M. Tschuchnig Lea Maria Stangassinger Christina Kreutzer S. Couillard-Després G. Oostingh Anton Hittmair MedIm 19 5 0 15 Dec 2020
Deep Learning-Based Grading of Ductal Carcinoma In Situ in Breast Histopathology Images S. Wetstein N. Stathonikos J. Pluim Y. Heng N. T. ter Hoeve C. Vreuls P. V. van Diest M. Veta 13 24 0 07 Oct 2020
Siloed Federated Learning for Multi-Centric Histopathology Datasets M. Andreux Jean Ogier du Terrail C. Béguier Eric W. Tramel FedML OOD AI4CE 12 113 0 17 Aug 2020
Visualization for Histopathology Images using Graph Convolutional Neural Networks M. Sureka Abhijeet Patil Deepak Anand A. Sethi FAtt GNN MedIm 20 36 0 16 Jun 2020
CNN-based Approach for Cervical Cancer Classification in Whole-Slide Histopathology Images Ferdaous Idlahcen M. Himmi A. Mahmoudi 17 9 0 28 May 2020
Generative Adversarial Networks in Digital Pathology: A Survey on Trends and Future Potential M. Tschuchnig G. Oostingh M. Gadermayr MedIm AI4CE GAN 13 88 0 30 Apr 2020
Representation Learning of Histopathology Images using Graph Neural Networks Mohammed Adnan Shivam Kalra Hamid R. Tizhoosh OOD 16 96 0 16 Apr 2020
Deep learning assessment of breast terminal duct lobular unit involution: towards automated prediction of breast cancer risk S. Wetstein Allison M. Onken Christina Luffman G. Baker Michael E. Pyle ... S. Schnitt J. Pluim R. Tamimi Y. Heng M. Veta 20 29 0 31 Oct 2019
Deep Weakly-Supervised Learning Methods for Classification and Localization in Histology Images: A Survey Jérôme Rony Soufiane Belharbi Jose Dolz Ismail Ben Ayed Luke McCaffrey Eric Granger 25 70 0 08 Sep 2019