CASTER: Predicting Drug Interactions with Chemical Substructure Representation

15 November 2019

Jimeng Sun

Papers citing "CASTER: Predicting Drug Interactions with Chemical Substructure Representation"

23 / 23 papers shown

Title
Natural Language-Assisted Multi-modal Medication Recommendation Jie Tan Yu Rong Kangfei Zhao Tian Bian Tingyang Xu Junzhou Huang Hong Cheng H. Meng 51 1 0 13 Jan 2025
Molecular Graph Representation Learning via Structural Similarity Information Chengyu Yao Hong Huang Hang Gao Fengge Wu Haiming Chen Junsuo Zhao 26 0 0 13 Sep 2024
ADEP: A Novel Approach Based on Discriminator-Enhanced Encoder-Decoder Architecture for Accurate Prediction of Adverse Effects in Polypharmacy Katayoun Kobraei Mehrdad Baradaran Seyed Mohsen Sadeghi Raziyeh Masumshah C. Eslahchi 16 1 0 31 May 2024
Comprehensive evaluation of deep and graph learning on drug-drug interactions prediction Xuan Lin Lichang Dai Yafang Zhou Zunpeng Yu Wen Zhang ... Li Zeng Hao-Heng Chen Bosheng Song Philip S. Yu Xiangxiang Zeng GNN 21 56 0 08 Jun 2023
BatmanNet: Bi-branch Masked Graph Transformer Autoencoder for Molecular Representation Zhen Wang Zheng Feng Yanjun Li Bowen Li Yongrui Wang C. Sha Min He Xiaolin Li AI4CE 27 9 0 25 Nov 2022
Review of Natural Language Processing in Pharmacology D. Trajanov Vangel Trajkovski Makedonka Dimitrieva Jovana Dobreva Milos Jovanovik Matej Klemen Alevs vZagar Marko Robnik-vSikonja LM&MA 23 7 0 22 Aug 2022
DDI Prediction via Heterogeneous Graph Attention Networks Farhan Tanvir Khaled Mohammed Saifuddin Esra Akbas 14 1 0 12 Jul 2022
HyGNN: Drug-Drug Interaction Prediction via Hypergraph Neural Network Khaled Mohammed Saifuddin Bri Bumgardnerr Farhan Tanvir Esra Akbas 9 27 0 25 Jun 2022
Graph neural networks and attention-based CNN-LSTM for protein classification Zhuangwei Shi Bo Li 7 3 0 20 Apr 2022
Multi-View Substructure Learning for Drug-Drug Interaction Prediction Zimeng Li Shi-jing Zhu Bin Shao Tie-Yan Liu Xiangxiang Zeng Tong Wang 14 1 0 28 Mar 2022
Knowledge-informed Molecular Learning: A Survey on Paradigm Transfer Yin Fang Zhuo Chen Xiaohui Fan Qiang Zhang 45 3 0 17 Feb 2022
ChemicalX: A Deep Learning Library for Drug Pair Scoring Benedek Rozemberczki Charles Tapley Hoyt A. Gogleva Piotr Grabowski Klas Karis ... Sebastian Nilsson M. Ughetto Yu-Chiang Frank Wang Tyler Derr Benjamin M. Gyori 15 25 0 10 Feb 2022
STNN-DDI: A Substructure-aware Tensor Neural Network to Predict Drug-Drug Interactions Hui Yu Shiyu Zhao Jianyu Shi 14 33 0 10 Nov 2021
A Unified View of Relational Deep Learning for Drug Pair Scoring Benedek Rozemberczki Stephen Bonner A. Nikolov M. Ughetto Sebastian Nilsson Eliseo Papa 11 15 0 04 Nov 2021
Molformer: Motif-based Transformer on 3D Heterogeneous Molecular Graphs Fang Wu Dragomir R. Radev Huabin Xing ViT 22 54 0 04 Oct 2021
Relation Matters in Sampling: A Scalable Multi-Relational Graph Neural Network for Drug-Drug Interaction Prediction A. Feeney Rishabh Gupta Veronika Thost Rico Angell Gayathri Chandu Yash Adhikari Tengfei Ma 17 11 0 28 May 2021
SafeDrug: Dual Molecular Graph Encoders for Recommending Effective and Safe Drug Combinations Chaoqi Yang Cao Xiao Fenglong Ma Lucas Glass Jimeng Sun 19 77 0 05 May 2021
Predicting Drug-Drug Interactions from Heterogeneous Data: An Embedding Approach D. Dhami Siwen Yan Gautam Kunapuli David Page S. Natarajan 13 3 0 19 Mar 2021
Learn molecular representations from large-scale unlabeled molecules for drug discovery Pengyong Li Jun Wang Yixuan Qiao Hao Chen Yihuan Yu Xiaojun Yao Peng Gao Guotong Xie Sen Song GNN 22 28 0 21 Dec 2020
SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summarization Yue Yu Kexin Huang Chao Zhang Lucas Glass Jimeng Sun Cao Xiao 22 119 0 04 Oct 2020
SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks Kexin Huang C. Xiao Lucas Glass Marinka Zitnik Jimeng Sun GNN 21 116 0 30 Apr 2020
DeepPurpose: a Deep Learning Library for Drug-Target Interaction Prediction Kexin Huang Tianfan Fu Lucas Glass Marinka Zitnik Cao Xiao Jimeng Sun VLM 13 17 0 19 Apr 2020
CORE: Automatic Molecule Optimization Using Copy & Refine Strategy Tianfan Fu Cao Xiao Jimeng Sun 26 63 0 23 Nov 2019