Yottixel -- An Image Search Engine for Large Archives of Histopathology Whole Slide Images

20 November 2019

H. R. Tizhoosh

Papers citing "Yottixel -- An Image Search Engine for Large Archives of Histopathology Whole Slide Images"

39 / 39 papers shown

Title
THIR: Topological Histopathological Image Retrieval Zahra Tabatabaei Jon Sporring 76 0 0 17 Nov 2025
EvoPS: Evolutionary Patch Selection for Whole Slide Image Analysis in Computational Pathology Saya Hashemian Azam Asilian Bidgoli 80 0 0 10 Nov 2025
Fusion of Multi-scale Heterogeneous Pathology Foundation Models for Whole Slide Image Analysis Zhidong Yang Xiuhui Shi Wei Ba Zhigang Song Haijing Luan Taiyuan Hu Senlin Lin Jiguang Wang S. Kevin Zhou Rui Yan 96 0 0 31 Oct 2025
Accurate and Scalable Multimodal Pathology Retrieval via Attentive Vision-Language Alignment Hongyi Wang Zhengjie Zhu Jiabo Ma Fang Wang Yue Shi ... Qiuyu Cai X. Zhang Yen-Wei Chen Lanfen Lin Hao Chen 71 0 0 27 Oct 2025
Standardized Multi-Layer Tissue Maps for Enhanced Artificial Intelligence Integration and Search in Large-Scale Whole Slide Image Archives Gernot Fiala M. Plass Robert Harb P. Regitnig Kristijan Skok ... Roman Stoklasa Rudolf Nenutil N. Zerbe Andreas Holzinger Petr Holub 80 0 0 29 Aug 2025
RALAD: Bridging the Real-to-Sim Domain Gap in Autonomous Driving with Retrieval-Augmented Learning Jiacheng Zuo Haibo Hu Zikang Zhou Yufei Cui Ziquan Liu Jianping Wang Nan Guan Jin Wang Chun Jason Xue 364 2 0 21 Jan 2025
Multimodal Learning for Scalable Representation of High-Dimensional Medical Data Areej Alsaafin A. Shafique Saghir Alfasly H. R. Tizhoosh H.R.Tizhoosh 208 1 0 19 Sep 2024
A Short Survey on Set-Based Aggregation Techniques for Single-Vector WSI Representation in Digital Pathology S. Hemati Krishna R. Kalari H. R. Tizhoosh 103 0 0 06 Sep 2024
On Validation of Search & Retrieval of Tissue Images in Digital Pathology H. R. Tizhoosh 113 2 0 02 Aug 2024
Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology Andrew H. Song Richard J. Chen Tong Ding Drew F. K. Williamson Guillaume Jaume Faisal Mahmood MedIm 253 70 0 19 May 2024
Siamese Content-based Search Engine for a More Transparent Skin and Breast Cancer Diagnosis through Histological Imaging Zahra Tabatabaei Adrián Colomer Javier Oliver Moll Valery Naranjo 118 3 0 16 Jan 2024
RudolfV: A Foundation Model by Pathologists for Pathologists Jonas Dippel Barbara Feulner Tobias Winterhoff Timo Milbich Stephan Tietz ... David Horst Lukas Ruff Klaus-Robert Muller Frederick Klauschen Maximilian Alber 463 50 0 08 Jan 2024
Analysis and Validation of Image Search Engines in Histopathology Isaiah Lahr Saghir Alfasly Peyman Nejat Jibran A. Khan Luke Kottom ... Chady Meroueh Lisa Boardman Vijay H. Shah Joaquin J. Garcia H. R. Tizhoosh 204 4 0 06 Jan 2024
A Foundational Multimodal Vision Language AI Assistant for Human Pathology Ming Y. Lu Bowen Chen Drew F. K. Williamson Richard J. Chen Kenji Ikamura ... Ivy Liang L. Le Tong Ding Anil V. Parwani Faisal Mahmood MedIm LM&MA 178 28 0 13 Dec 2023
Selection of Distinct Morphologies to Divide & Conquer Gigapixel Pathology Images A. Shafique Saghir Alfasly Areej Alsaafin Peyman Nejat Jibran A. Khan H. R. Tizhoosh 181 1 0 16 Nov 2023
Rotation-Agnostic Image Representation Learning for Digital PathologyComputer Vision and Pattern Recognition (CVPR), 2023 Saghir Alfasly A. Shafique Peyman Nejat Jibran A. Khan Areej Alsaafin Ghazal Alabtah H. R. Tizhoosh MedIm 185 18 0 14 Nov 2023
Creating an Atlas of Normal Tissue for Pruning WSI Patching Through Anomaly DetectionScientific Reports (Sci Rep), 2023 Peyman Nejat Areej Alsaafin Ghazal Alabtah N. Comfere Aaron Mangold Dennis Murphree P. Zot Saba Yasir Joaquin J. Garcia H. R. Tizhoosh 174 4 0 04 Oct 2023
When is a Foundation Model a Foundation Model Saghir Alfasly Peyman Nejat S. Hemati Jibran A. Khan Isaiah Lahr ... Aaron Mangold Lisa Boardman Vijay H. Shah Joaquin J. Garcia H. R. Tizhoosh MedIm 152 10 0 14 Sep 2023
A General-Purpose Self-Supervised Model for Computational Pathology Richard J. Chen Tong Ding Ming Y. Lu Drew F. K. Williamson Guillaume Jaume ... Judy J. Wang Walt Williams L. Le Georg Gerber Faisal Mahmood MedIm 303 55 0 29 Aug 2023
Towards a Visual-Language Foundation Model for Computational Pathology Ming Y. Lu Bowen Chen Drew F. K. Williamson Richard J. Chen Ivy Liang ... Andrew Zhang L. Le Georg Gerber Anil V. Parwani Faisal Mahmood VLM MedIm 286 57 0 24 Jul 2023
Multimodal Pathology Image Search Between H&E Slides and Multiplexed Immunofluorescent Images Amir Hajighasemi Md Jillur Rahman Saurav M. Nasr Jai Prakash Veerla Aarti Darji Parisa Boodaghi Malidarreh Michael Robben Helen H Shang Jacob M. Luber 127 4 0 11 Jun 2023
Towards More Transparent and Accurate Cancer Diagnosis with an Unsupervised CAE ApproachIEEE Access (IEEE Access), 2023 Zahra Tabatabaei Adrián Colomer Javier Oliver Moll Valery Naranjo MedIm 174 8 0 19 May 2023
WWFedCBMIR: World-Wide Federated Content-Based Medical Image Retrieval Zahra Tabatabaei Yuandou Wang Adrián Colomer Javier Oliver Moll Zhiming Zhao Valery Naranjo MedIm 155 15 0 05 May 2023
Comments on 'Fast and scalable search of whole-slide images via self-supervised deep learning' Milad Sikaroudi M. Afshari A. Shafique Shivam Kalra H. R. Tizhoosh OOD 141 5 0 07 Apr 2023
Clinically Relevant Latent Space Embedding of Cancer Histopathology Slides through Variational Autoencoder Based Image CompressionIEEE International Symposium on Biomedical Imaging (ISBI), 2023 M. Nasr Amir Hajighasemi Paul Koomey Parisa Boodaghi Malidarreh Michael Robben Jillur Rahman Saurav Helen H. Shang Manfred Huber Jacob M. Luber MedIm 149 5 0 23 Mar 2023
Evolutionary Computation in Action: Feature Selection for Deep Embedding Spaces of Gigapixel Pathology ImagesIEEE Transactions on Evolutionary Computation (IEEE TEVC), 2023 Azam Asilian Bidgoli Shahryar Rahnamayan Taher Dehkharghanian Abtin Riasatian H. R. Tizhoosh 70 17 0 02 Mar 2023
Learning Binary and Sparse Permutation-Invariant Representations for Fast and Memory Efficient Whole Slide Image Search S. Hemati Shivam Kalra Morteza Babaie H. R. Tizhoosh 159 12 0 29 Aug 2022
Transformer-based Personalized Attention Mechanism for Medical Images with Clinical RecordsJournal of Pathology Informatics (J Pathol Inform), 2022 Yusuke Takagi Noriaki Hashimoto Hiroki Masuda H. Miyoshi K. Ohshima H. Hontani Ichiro Takeuchi ViT MedIm 158 11 0 07 Jun 2022
Learning to Predict RNA Sequence Expressions from Whole Slide Images with Applications for Search and ClassificationCommunications Biology (CB), 2022 Amir Safarpoor J. Hipp H. R. Tizhoosh MedIm 123 37 0 26 Mar 2022
Decentralized Federated Learning through Proxy Model SharingNature Communications (Nat Commun), 2021 Shivam Kalra Junfeng Wen Jesse C. Cresswell Anthony L. Caterini Hamid R. Tizhoosh FedML 263 145 0 22 Nov 2021
A Similarity Measure of Histopathology Images by Deep EmbeddingsAnnual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2021 M. Afshari H. R. Tizhoosh MedIm 118 5 0 29 Jul 2021
Fast and Scalable Image Search For Histology Chengkuan Chen Ming Y. Lu Drew F. K. Williamson Tiffany Y. Chen A. J. Schaumberg Faisal Mahmood 60 3 0 28 Jul 2021
Case-based Similar Image Retrieval for Weakly Annotated Large Histopathological Images of Malignant Lymphoma Using Deep Metric Learning Noriaki Hashimoto Y. Takagi Hiroki Masuda H. Miyoshi K. Kohno ... Yoshino Kawaguchi Shigeo Nakamura K. Ohshima H. Hontani Ichiro Takeuchi MedIm 280 20 0 08 Jul 2021
A Survey on Graph-Based Deep Learning for Computational Histopathology David Ahmedt-Aristizabal M. Armin Akila Pemasiri Clinton Fookes L. Petersson GNN AI4CE 252 133 0 01 Jul 2021
Pay Attention with Focus: A Novel Learning Scheme for Classification of Whole Slide ImagesInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2021 Shivam Kalra Mohammed Adnan S. Hemati Taher Dehkharghanian Shahryar Rahnamayan Hamid Tizhoosh 136 13 0 11 Jun 2021
Recognizing Magnification Levels in Microscopic Snapshots Manit Zaveri Shivam Kalra Morteza Babaie Sultaan Shah S. Damaskinos H. Kashani H. R. Tizhoosh 120 4 0 07 May 2020
Representation Learning of Histopathology Images using Graph Neural Networks Mohammed Adnan Shivam Kalra Hamid R. Tizhoosh OOD 131 110 0 16 Apr 2020
Pan-Cancer Diagnostic Consensus Through Searching Archival Histopathology Images Using Artificial Intelligencenpj Digital Medicine (NPJ Digit Med), 2019 Shivam Kalra H. R. Tizhoosh Sultaan Shah C. Choi S. Damaskinos ... Sobhan Shafiei Morteza Babaie P. Diamandis Clinton J. V. Campbell Liron Pantanowitz MedIm 194 110 0 20 Nov 2019
Learning Permutation Invariant Representations using Memory NetworksEuropean Conference on Computer Vision (ECCV), 2019 Shivam Kalra Mohammed Adnan Graham W. Taylor Hamid Tizhoosh 174 25 0 18 Nov 2019