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A Generalized Deep Learning Framework for Whole-Slide Image Segmentation
  and Analysis
v1v2 (latest)

A Generalized Deep Learning Framework for Whole-Slide Image Segmentation and Analysis

Scientific Reports (Sci Rep), 2020
1 January 2020
Mahendra Khened
Avinash Kori
Haran Rajkumar
Balaji Srinivasan
Ganapathy Krishnamurthi
    MedImLM&MA
ArXiv (abs)PDFHTML

Papers citing "A Generalized Deep Learning Framework for Whole-Slide Image Segmentation and Analysis"

40 / 40 papers shown
Contrastive Integrated Gradients: A Feature Attribution-Based Method for Explaining Whole Slide Image Classification
Contrastive Integrated Gradients: A Feature Attribution-Based Method for Explaining Whole Slide Image Classification
Anh Mai Vu
Tuan L. Vo
Ngoc Lam Quang Bui
Nam Nguyen Le Binh
Akash Awasthi
H. Q. Vo
T. Nguyen
Zhu Han
Chandra Mohan
Hien V. Nguyen
488
2
0
11 Nov 2025
GAS-MIL: Group-Aggregative Selection Multi-Instance Learning for Ensemble of Foundation Models in Digital Pathology Image Analysis
GAS-MIL: Group-Aggregative Selection Multi-Instance Learning for Ensemble of Foundation Models in Digital Pathology Image Analysis
Peiran Quan
Zifan Gu
Zhuo Zhao
Qin Zhou
Peifeng Ruan
Ruichen Rong
Yang Xie
Tao Wang
AI4CE
146
0
0
03 Oct 2025
OctreeNCA: Single-Pass 184 MP Segmentation on Consumer Hardware
OctreeNCA: Single-Pass 184 MP Segmentation on Consumer Hardware
Nick Lemke
John Kalkhof
Niklas Babendererde
Anirban Mukhopadhyay
112
0
0
09 Aug 2025
A Novel Approach to Linking Histology Images with DNA Methylation
A Novel Approach to Linking Histology Images with DNA Methylation
M. Raza
Muhammad Dawood
Talha Qaiser
Nasir M. Rajpoot
249
1
0
07 Apr 2025
Vision Transformers with Autoencoders and Explainable AI for Cancer Patient Risk Stratification Using Whole Slide Imaging
Vision Transformers with Autoencoders and Explainable AI for Cancer Patient Risk Stratification Using Whole Slide Imaging
Ahmad Hussein
Mukesh Prasad
Ali Anaissi
Ali Braytee
MedIm
356
2
0
07 Apr 2025
The impact of tissue detection on diagnostic artificial intelligence algorithms in digital pathology
The impact of tissue detection on diagnostic artificial intelligence algorithms in digital pathology
Sol Erika Boman
N. Mulliqi
A. Blilie
X. Ji
Kelvin Szolnoky
...
B. Pedersen
K. D. Sørensen
B. Ulhøi
L. Egevad
K. Kartasalo
266
3
0
29 Mar 2025
A Novel Framework for the Automated Characterization of Gram-Stained
  Blood Culture Slides Using a Large-Scale Vision Transformer
A Novel Framework for the Automated Characterization of Gram-Stained Blood Culture Slides Using a Large-Scale Vision TransformerJournal of Clinical Microbiology (JCM), 2024
Jack McMahon
Naofumi Tomita
Elizabeth S. Tatishev
Adrienne A. Workman
Cristina R Costales
Niaz Banaei
Isabella W. Martin
Saeed Hassanpour
274
8
0
23 Sep 2024
Multi-Cohort Framework with Cohort-Aware Attention and Adversarial
  Mutual-Information Minimization for Whole Slide Image Classification
Multi-Cohort Framework with Cohort-Aware Attention and Adversarial Mutual-Information Minimization for Whole Slide Image Classification
Sharon Peled
Y. Maruvka
Moti Freiman
271
1
0
17 Sep 2024
Dataset Distillation for Histopathology Image Classification
Dataset Distillation for Histopathology Image Classification
Cong Cong
Shiyu Xuan
Sidong Liu
Maurice Pagnucco
Shiliang Zhang
Yang Song
DD
261
3
0
19 Aug 2024
When Medical Imaging Met Self-Attention: A Love Story That Didn't Quite
  Work Out
When Medical Imaging Met Self-Attention: A Love Story That Didn't Quite Work Out
Tristan Piater
Niklas Penzel
Gideon Stein
Joachim Denzler
352
2
0
18 Apr 2024
Finding Regions of Interest in Whole Slide Images Using Multiple
  Instance Learning
Finding Regions of Interest in Whole Slide Images Using Multiple Instance Learning
Martim Afonso
Praphulla M. S. Bhawsar
Monjoy Saha
Jonas S. Almeida
Arlindo L. Oliveira
330
0
0
01 Apr 2024
Integrative Graph-Transformer Framework for Histopathology Whole Slide
  Image Representation and Classification
Integrative Graph-Transformer Framework for Histopathology Whole Slide Image Representation and Classification
Zhan Shi
Jingwei Zhang
Jun Kong
Fusheng Wang
MedIm
344
8
0
26 Mar 2024
Equipping Computational Pathology Systems with Artifact Processing
  Pipelines: A Showcase for Computation and Performance Trade-offs
Equipping Computational Pathology Systems with Artifact Processing Pipelines: A Showcase for Computation and Performance Trade-offsmedRxiv (medRxiv), 2024
Neel Kanwal
Farbod Khoraminia
Umay Kiraz
Andrés Mosquera-Zamudio
Carlos Monteagudo
Emiel A. M. Janssen
T. Zuiverloon
Chunmig Rong
K. Engan
MoE
399
17
0
12 Mar 2024
HistGen: Histopathology Report Generation via Local-Global Feature
  Encoding and Cross-modal Context Interaction
HistGen: Histopathology Report Generation via Local-Global Feature Encoding and Cross-modal Context InteractionInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2024
Zhengrui Guo
Jiabo Ma
Ying Xu
Yihui Wang
Liansheng Wang
Hao Chen
580
51
0
08 Mar 2024
Boundary-aware Contrastive Learning for Semi-supervised Nuclei Instance
  Segmentation
Boundary-aware Contrastive Learning for Semi-supervised Nuclei Instance Segmentation
Ye Zhang
Ziyue Wang
Yifeng Wang
Hao Bian
Linghan Cai
Hengrui Li
Lingbo Zhang
Yongbing Zhang
SSL
228
5
0
07 Feb 2024
SEINE: Structure Encoding and Interaction Network for Nuclei Instance
  Segmentation
SEINE: Structure Encoding and Interaction Network for Nuclei Instance Segmentation
Ye Zhang
Linghan Cai
Ziyue Wang
Yongbing Zhang
314
11
0
18 Jan 2024
On the calibration of neural networks for histological slide-level
  classification
On the calibration of neural networks for histological slide-level classification
Alexander Kurz
H. A. Mehrtens
Tabea-Clara Bucher
T. Brinker
UQCVMedIm
215
0
0
15 Dec 2023
Performance of externally validated machine learning models based on
  histopathology images for the diagnosis, classification, prognosis, or
  treatment outcome prediction in female breast cancer: A systematic review
Performance of externally validated machine learning models based on histopathology images for the diagnosis, classification, prognosis, or treatment outcome prediction in female breast cancer: A systematic reviewJournal of Pathology Informatics (J Pathol Inform), 2023
Ricardo Gonzalez
Peyman Nejat
Ashirbani Saha
Clinton J.V. Campbell
Andrew P. Norgan
Cynthia Lokker
275
13
0
09 Dec 2023
Semi-supervised ViT knowledge distillation network with style transfer
  normalization for colorectal liver metastases survival prediction
Semi-supervised ViT knowledge distillation network with style transfer normalization for colorectal liver metastases survival prediction
Mohamed El Amine Elforaici
E. Montagnon
Francisco Perdigon Romero
W. Le
F. Azzi
Dominique Trudel
Bich Nguyen
Simon Turcotte
An Tang
Samuel Kadoury
MedIm
341
4
0
17 Nov 2023
Efficient Segmentation with Texture in Ore Images Based on
  Box-supervised Approach
Efficient Segmentation with Texture in Ore Images Based on Box-supervised Approach
Guodong Sun
Delong Huang
Yuting Peng
Lei Cheng
Bo Wu
Yang Zhang
340
3
0
10 Nov 2023
Patient-specific, mechanistic models of tumor growth incorporating
  artificial intelligence and big data
Patient-specific, mechanistic models of tumor growth incorporating artificial intelligence and big data
G. Lorenzo
Syed Rakin Ahmed
D. Hormuth
Brenna Vaughn
Jayashree Kalpathy-Cramer
Luis Solorio
T. Yankeelov
H. Gómez
AI4CE
350
22
0
28 Aug 2023
Rapid Artefact Removal and H&E-Stained Tissue Segmentation
Rapid Artefact Removal and H&E-Stained Tissue SegmentationScientific Reports (Sci Rep), 2023
B. Schreiber
J. Denholm
F. Jaeckle
M. Arends
K. M. Branson
C.-B. Schönlieb
E. Soilleux
260
12
0
25 Aug 2023
An Investigation into Glomeruli Detection in Kidney H&E and PAS Images
  using YOLO
An Investigation into Glomeruli Detection in Kidney H&E and PAS Images using YOLO
Kimia Hemmatirad
Morteza Babaie
J. Hodgin
Liron Pantanowitz
H. R. Tizhoosh
193
1
0
25 Jul 2023
The State of Applying Artificial Intelligence to Tissue Imaging for
  Cancer Research and Early Detection
The State of Applying Artificial Intelligence to Tissue Imaging for Cancer Research and Early DetectionF1000Research (F1000Research), 2023
Michael Robben
Amir Hajighasemi
M. Nasr
Jai Prakesh Veerla
Anne M. Alsup
...
Kelli Fowlds
Parisa Boodaghi Malidarreh
Paul Koomey
Jillur Rahman Saurav
Jacob M. Luber
AI4CE
298
5
0
29 Jun 2023
Realistic Data Enrichment for Robust Image Segmentation in
  Histopathology
Realistic Data Enrichment for Robust Image Segmentation in Histopathology
Sarah Cechnicka
James G. C. Ball
Hadrien Reynaud
C. Arthurs
C. Roufosse
Bernhard Kainz
DiffM
264
7
0
19 Apr 2023
Robust Tumor Detection from Coarse Annotations via Multi-Magnification
  Ensembles
Robust Tumor Detection from Coarse Annotations via Multi-Magnification Ensembles
Mehdi Naouar
Gabriel Kalweit
Ignacio Mastroleo
P. Poxleitner
M. Metzger
Joschka Boedecker
M. Kalweit
208
2
0
29 Mar 2023
MulGT: Multi-task Graph-Transformer with Task-aware Knowledge Injection
  and Domain Knowledge-driven Pooling for Whole Slide Image Analysis
MulGT: Multi-task Graph-Transformer with Task-aware Knowledge Injection and Domain Knowledge-driven Pooling for Whole Slide Image AnalysisAAAI Conference on Artificial Intelligence (AAAI), 2023
Weiqin Zhao
Shujun Wang
Maximus C. F. Yeung
Tianye Niu
Lequan Yu
606
15
0
21 Feb 2023
Multi-domain stain normalization for digital pathology: A
  cycle-consistent adversarial network for whole slide images
Multi-domain stain normalization for digital pathology: A cycle-consistent adversarial network for whole slide images
Martin J. Hetz
Tabea-Clara Bucher
T. Brinker
OODMedIm
262
28
0
23 Jan 2023
Diagnose Like a Pathologist: Transformer-Enabled Hierarchical
  Attention-Guided Multiple Instance Learning for Whole Slide Image
  Classification
Diagnose Like a Pathologist: Transformer-Enabled Hierarchical Attention-Guided Multiple Instance Learning for Whole Slide Image ClassificationInternational Joint Conference on Artificial Intelligence (IJCAI), 2023
Conghao Xiong
Hao Chen
Joseph J. Y. Sung
Irwin King
MedIm
317
64
0
19 Jan 2023
Benchmarking common uncertainty estimation methods with
  histopathological images under domain shift and label noise
Benchmarking common uncertainty estimation methods with histopathological images under domain shift and label noise
H. A. Mehrtens
Alexander Kurz
Tabea-Clara Bucher
T. Brinker
OODUQCV
575
20
0
03 Jan 2023
Variability Matters : Evaluating inter-rater variability in
  histopathology for robust cell detection
Variability Matters : Evaluating inter-rater variability in histopathology for robust cell detection
Cholmin Kang
C. Lee
Heon Song
M. Ma
Sérgio Pereira
317
11
0
11 Oct 2022
Glo-In-One: Holistic Glomerular Detection, Segmentation, and Lesion
  Characterization with Large-scale Web Image Mining
Glo-In-One: Holistic Glomerular Detection, Segmentation, and Lesion Characterization with Large-scale Web Image MiningJournal of Medical Imaging (JMI), 2022
Tianyuan Yao
Yuzhe Lu
Jun Long
Aadarsh Jha
Zheyu Zhu
Zuhayr Asad
Haichun Yang
Agnes B. Fogo
Yuankai Huo
352
15
0
31 May 2022
Preparing data for pathological artificial intelligence with
  clinical-grade performance
Preparing data for pathological artificial intelligence with clinical-grade performance
Yuanqing Yang
K. Sun
Yanhua Gao
Kuang-Heng Wang
Gang Yu
OOD
181
1
0
22 May 2022
A workflow for segmenting soil and plant X-ray CT images with deep
  learning in Googles Colaboratory
A workflow for segmenting soil and plant X-ray CT images with deep learning in Googles Colaboratory
D. Rippner
P. Raja
Mason Earles
A. Buchko
M. Momayyezi
...
Dilworth Parkinson
Elizabeth Forrestel
K. Shackel
Jeffrey Neyhart
A. McElrone
258
0
0
18 Mar 2022
Holistic Fine-grained GGS Characterization: From Detection to Unbalanced
  Classification
Holistic Fine-grained GGS Characterization: From Detection to Unbalanced Classification
Yuzhe Lu
Haichun Yang
Zuhayr Asad
Zheyu Zhu
Tianyuan Yao
Jiachen Xu
Agnes B. Fogo
Yuankai Huo
318
1
0
31 Jan 2022
Magnifying Networks for Images with Billions of Pixels
Magnifying Networks for Images with Billions of Pixels
Neofytos Dimitriou
Ognjen Arandjelovic
450
3
0
12 Dec 2021
Hybrid Supervision Learning for Pathology Whole Slide Image
  Classification
Hybrid Supervision Learning for Pathology Whole Slide Image Classification
Jiahui Li
Wen Chen
Xiaodi Huang
Zhiqiang Hu
Qi Duan
Jiaming Song
Dimitris N. Metaxas
Shaoting Zhang
405
22
0
02 Jul 2021
Fast whole-slide cartography in colon cancer histology using superpixels
  and CNN classification
Fast whole-slide cartography in colon cancer histology using superpixels and CNN classificationJournal of Medical Imaging (JMI), 2021
Frauke Wilm
M. Benz
Volker Bruns
Serop Baghdadlian
Jakob Dexl
...
Thomas Wittenberg
S. Merkel
A. Hartmann
Markus Eckstein
C. Geppert
290
7
0
30 Jun 2021
Colorectal Cancer Segmentation using Atrous Convolution and Residual
  Enhanced UNet
Colorectal Cancer Segmentation using Atrous Convolution and Residual Enhanced UNetInternational Conference on Computer Vision and Image Processing (ICCVIP), 2021
Nisarg A. Shah
D. Gupta
Romil Lodaya
Ujjwal Baid
Sanjay Talbar
SSegMedIm
205
11
0
16 Mar 2021
Brain Tumor Segmentation and Survival Prediction using Automatic Hard
  mining in 3D CNN Architecture
Brain Tumor Segmentation and Survival Prediction using Automatic Hard mining in 3D CNN Architecture
V. K. Anand
Sanjeev Grampurohit
P. Aurangabadkar
Avinash Kori
Mahendra Khened
R. S. Bhat
Ganapathy Krishnamurthi
219
34
0
05 Jan 2021
1
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