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Heidelberg Colorectal Data Set for Surgical Data Science in the Sensor
  Operating Room
v1v2v3v4v5 (latest)

Heidelberg Colorectal Data Set for Surgical Data Science in the Sensor Operating Room

7 May 2020
Lena Maier-Hein
M. Wagner
T. Ross
Annika Reinke
S. Bodenstedt
Peter M. Full
Hellena Hempe
D. Filimon
Patrick Scholz
T. Tran
Pierangela Bruno
A. Kisilenko
Benjamin Müller
Tornike Davitashvili
Manuela Capek
M. Tizabi
Matthias Eisenmann
T. Adler
J. Gröhl
Melanie Schellenberg
Silvia Seidlitz
T. Y. E. Lai
Bunyamin Pekdemir
Veith Roethlingshoefer
Fabian Both
Sebastian Bittel
M. Mengler
Lars Mundermann
M. Apitz
Annette Kopp-Schneider
Stefanie Speidel
H. Kenngott
Beat P. Müller-Stich
ArXiv (abs)PDFHTML

Papers citing "Heidelberg Colorectal Data Set for Surgical Data Science in the Sensor Operating Room"

40 / 40 papers shown
The SAGES Critical View of Safety Challenge: A Global Benchmark for AI-Assisted Surgical Quality Assessment
The SAGES Critical View of Safety Challenge: A Global Benchmark for AI-Assisted Surgical Quality Assessment
Deepak Alapatt
J. Eckhoff
Zhiliang Lyu
Yutong Ban
J. Mazellier
...
Pietro Mascagni
Daniel A. Hashimoto
Guy Rosman
Ozanan Meireles
Nicolas Padoy
ELM
176
4
0
21 Sep 2025
Leveraging Generic Foundation Models for Multimodal Surgical Data Analysis
Leveraging Generic Foundation Models for Multimodal Surgical Data Analysis
Simon Pezold
Jérôme A. Kurylec
Jan S. Liechti
Beat P. Müller
Joël L. Lavanchy
128
0
0
08 Sep 2025
ROBUST-MIPS: A Combined Skeletal Pose and Instance Segmentation Dataset for Laparoscopic Surgical Instruments
ROBUST-MIPS: A Combined Skeletal Pose and Instance Segmentation Dataset for Laparoscopic Surgical Instruments
Zhe Han
Charlie Budd
Gongyu Zhang
Huanyu Tian
Christos Bergeles
Tom Vercauteren
163
3
0
27 Aug 2025
Challenging Vision-Language Models with Surgical Data: A New Dataset and Broad Benchmarking Study
Challenging Vision-Language Models with Surgical Data: A New Dataset and Broad Benchmarking Study
Leon D. Mayer
Tim Radsch
Dominik Michael
Lucas Luttner
Amine Yamlahi
...
Patrick Godau
Marcel Knopp
Annika Reinke
Fiona Kolbinger
Lena Maier-Hein
346
0
0
06 Jun 2025
Surgical Foundation Model Leveraging Compression and Entropy Maximization for Image-Guided Surgical Assistance
Surgical Foundation Model Leveraging Compression and Entropy Maximization for Image-Guided Surgical Assistance
Lianhao Yin
O. Meireles
Guy Rosman
Daniela Rus
227
0
0
16 May 2025
EndoOmni: Zero-Shot Cross-Dataset Depth Estimation in Endoscopy by Robust Self-Learning from Noisy Labels
EndoOmni: Zero-Shot Cross-Dataset Depth Estimation in Endoscopy by Robust Self-Learning from Noisy Labels
Qingyao Tian
Zhen Chen
Huai Liao
Xinyan Huang
Lujie Li
Sebastien Ourselin
Hongbin Liu
665
13
0
09 Sep 2024
Exploring the Effect of Dataset Diversity in Self-Supervised Learning
  for Surgical Computer Vision
Exploring the Effect of Dataset Diversity in Self-Supervised Learning for Surgical Computer Vision
Tim J. M. Jaspers
Ronald L.P.D. de Jong
Yasmina Alkhalil
Tijn Zeelenberg
C. H. Kusters
...
Franciscus Hendericus Aäron Bakker
J P Ruurda
Willem M. Brinkman
Peter H. N. de With
Fons van der Sommen
383
11
0
25 Jul 2024
Quality Assured: Rethinking Annotation Strategies in Imaging AI
Quality Assured: Rethinking Annotation Strategies in Imaging AI
Tim Radsch
Annika Reinke
V. Weru
M. Tizabi
Nicholas Heller
Hyunjin Park
Annette Kopp-Schneider
Lena Maier-Hein
316
10
0
24 Jul 2024
OphNet: A Large-Scale Video Benchmark for Ophthalmic Surgical Workflow
  Understanding
OphNet: A Large-Scale Video Benchmark for Ophthalmic Surgical Workflow Understanding
Ming Hu
Peng Xia
Lin Wang
Siyuan Yan
Feilong Tang
...
Xuelian Cheng
Jun Cheng
Chi Liu
Kaijing Zhou
Zongyuan Ge
393
32
0
11 Jun 2024
Instrument-tissue Interaction Detection Framework for Surgical Video
  Understanding
Instrument-tissue Interaction Detection Framework for Surgical Video Understanding
Wenjun Lin
Yan Hu
Huazhu Fu
Mingming Yang
Chin-Boon Chng
Ryo Kawasaki
Cheekong Chui
Jiang-Dong Liu
427
10
0
30 Mar 2024
Pixel-Wise Recognition for Holistic Surgical Scene Understanding
Pixel-Wise Recognition for Holistic Surgical Scene Understanding
Nicolás Ayobi
Santiago Rodríguez
Alejandra Pérez
Isabela Hernández
Nicolás Aparicio
...
Sebastián Pena
J. Santander
J. Caicedo
Nicolás Fernández
Pablo Arbelaez
ViTMedIm
265
47
0
20 Jan 2024
Multitask Learning in Minimally Invasive Surgical Vision: A Review
Multitask Learning in Minimally Invasive Surgical Vision: A Review
Oluwatosin O. Alabi
Tom Vercauteren
Miaojing Shi
359
1
0
16 Jan 2024
General-purpose foundation models for increased autonomy in
  robot-assisted surgery
General-purpose foundation models for increased autonomy in robot-assisted surgery
Samuel Schmidgall
Ji Woong Kim
Alan Kuntz
A. Ghazi
Axel Krieger
MedIm
345
29
0
01 Jan 2024
Video-Instrument Synergistic Network for Referring Video Instrument
  Segmentation in Robotic Surgery
Video-Instrument Synergistic Network for Referring Video Instrument Segmentation in Robotic Surgery
Hongqiu Wang
Lei Zhu
Guang Yang
Yi-Ting Guo
Shenmin Zhang
Bo Xu
Yueming Jin
VOS
214
0
0
18 Aug 2023
Syn-Mediverse: A Multimodal Synthetic Dataset for Intelligent Scene
  Understanding of Healthcare Facilities
Syn-Mediverse: A Multimodal Synthetic Dataset for Intelligent Scene Understanding of Healthcare FacilitiesIEEE Robotics and Automation Letters (RA-L), 2023
Rohit Mohan
J. Arce
Sassan Mokhtar
Daniele Cattaneo
Abhinav Valada
269
9
0
06 Aug 2023
Colo-ReID: Discriminative Representation Embedding with Meta-learning for Colonoscopic Polyp Re-Identification
Colo-ReID: Discriminative Representation Embedding with Meta-learning for Colonoscopic Polyp Re-Identification
Suncheng Xiang
Qingguo Chen
Shilun Cai
Shilun Cai
C. Cai
425
2
0
02 Aug 2023
Surgical Phase and Instrument Recognition: How to identify appropriate
  Dataset Splits
Surgical Phase and Instrument Recognition: How to identify appropriate Dataset SplitsInternational Journal of Computer Assisted Radiology and Surgery (IJCARS), 2023
Georgii Kostiuchik
Lalith Sharan
Benedikt Mayer
I. Wolf
B. Preim
Sandy Engelhardt
273
8
0
29 Jun 2023
Attention Mechanisms in Medical Image Segmentation: A Survey
Attention Mechanisms in Medical Image Segmentation: A Survey
Yutong Xie
Bing Yang
Qi Guan
Jianpeng Zhang
Qi Wu
Yong-quan Xia
ViTMedIm
270
51
0
29 May 2023
Whether and When does Endoscopy Domain Pretraining Make Sense?
Whether and When does Endoscopy Domain Pretraining Make Sense?
Dominik Batić
Felix Holm
Ege Özsoy
Tobias Czempiel
Nassir Navab
352
10
0
30 Mar 2023
Colo-SCRL: Self-Supervised Contrastive Representation Learning for
  Colonoscopic Video Retrieval
Colo-SCRL: Self-Supervised Contrastive Representation Learning for Colonoscopic Video RetrievalIEEE International Conference on Multimedia and Expo (ICME), 2023
Qingguo Chen
Shilun Cai
C. Cai
Zefang Yu
Xiaobo Li
Suncheng Xiang
239
9
0
28 Mar 2023
CholecTriplet2022: Show me a tool and tell me the triplet -- an
  endoscopic vision challenge for surgical action triplet detection
CholecTriplet2022: Show me a tool and tell me the triplet -- an endoscopic vision challenge for surgical action triplet detection
C. Nwoye
Tong Yu
Saurav Sharma
Aditya Murali
Deepak Alapatt
...
Pietro Mascagni
B. Seeliger
Cristians Gonzalez
Didier Mutter
N. Padoy
285
43
0
13 Feb 2023
MURPHY: Relations Matter in Surgical Workflow Analysis
MURPHY: Relations Matter in Surgical Workflow Analysis
Shang Zhao
Y. Liu
Qiyuan Wang
Dai Sun
Rong Liu
S.Kevin Zhou
238
5
0
24 Dec 2022
Towards Holistic Surgical Scene Understanding
Towards Holistic Surgical Scene UnderstandingInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2022
Natalia Valderrama
Paola Ruiz Puentes
Isabela Hernández
Nicolás Ayobi
Mathilde Verlyck
J. Santander
J. Caicedo
Nicolás Fernández
Pablo Arbelaez
565
59
0
08 Dec 2022
A comprehensive survey on recent deep learning-based methods applied to
  surgical data
A comprehensive survey on recent deep learning-based methods applied to surgical data
Mansoor Ali
Rafael Martinez Garcia Peña
Gilberto Ochoa-Ruiz
Sharib Ali
490
7
0
03 Sep 2022
Labeling instructions matter in biomedical image analysis
Labeling instructions matter in biomedical image analysisNature Machine Intelligence (Nat. Mach. Intell.), 2022
Tim Radsch
Annika Reinke
V. Weru
M. Tizabi
Nicholas Schreck
A. Emre Kavur
Bunyamin Pekdemir
T. Ross
A. Kopp-Schneider
Lena Maier-Hein
234
74
0
20 Jul 2022
Metrics reloaded: Recommendations for image analysis validation
Metrics reloaded: Recommendations for image analysis validationNature Methods (Nat Methods), 2022
Lena Maier-Hein
Annika Reinke
Patrick Godau
M. Tizabi
Florian Buettner
...
Aleksei Tiulpin
Sotirios A. Tsaftaris
Ben Van Calster
Gaël Varoquaux
Paul F. Jäger
766
388
0
03 Jun 2022
EndoMapper dataset of complete calibrated endoscopy procedures
EndoMapper dataset of complete calibrated endoscopy proceduresScientific Data (Sci Data), 2022
P. Azagra
C. Sostres
Ángel Ferrandez
L. Riazuelo
Clara Tomasini
...
Javier Civera
Juan D. Tardós
Ana C. Murillo
Á. Lanas
José M.M. Montiel
271
83
0
29 Apr 2022
Segmenting Medical Instruments in Minimally Invasive Surgeries using
  AttentionMask
Segmenting Medical Instruments in Minimally Invasive Surgeries using AttentionMask
Christian Wilms
Alexander Michael Gerlach
Rüdiger Schmitz
Simone Frintrop
MedIm
220
2
0
21 Mar 2022
Robust deep learning-based semantic organ segmentation in hyperspectral
  images
Robust deep learning-based semantic organ segmentation in hyperspectral images
Silvia Seidlitz
Jiansheng Fang
Jan Odenthal
Berkin Özdemir
Huazhu Fu
...
Jiang-Dong Liu
Martin Wagner
Felix Nickel
Beat P. Müller-Stich
Lena Maier-Hein
234
25
0
09 Nov 2021
Real-time Instance Segmentation of Surgical Instruments using Attention
  and Multi-scale Feature Fusion
Real-time Instance Segmentation of Surgical Instruments using Attention and Multi-scale Feature Fusion
Juan Carlos Angeles Ceron
Gilberto Ochoa-Ruiz
Leonardo Chang
Sharib Ali
302
47
0
09 Nov 2021
hSDB-instrument: Instrument Localization Database for Laparoscopic and
  Robotic Surgeries
hSDB-instrument: Instrument Localization Database for Laparoscopic and Robotic SurgeriesInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2021
Jihun Yoon
Jiwon Lee
Sung-Woo Heo
Hayeong Yu
Jayeon Lim
...
Seungbum Hong
Bokyung Park
Sunghyun Park
W. Hyung
Min-Kook Choi
170
6
0
24 Oct 2021
Deep Homography Estimation in Dynamic Surgical Scenes for Laparoscopic
  Camera Motion Extraction
Deep Homography Estimation in Dynamic Surgical Scenes for Laparoscopic Camera Motion Extraction
Martin Huber
Sébastien Ourselin
Christos Bergeles
Tom Vercauteren
MedIm
235
8
0
30 Sep 2021
Comparative Validation of Machine Learning Algorithms for Surgical
  Workflow and Skill Analysis with the HeiChole Benchmark
Comparative Validation of Machine Learning Algorithms for Surgical Workflow and Skill Analysis with the HeiChole Benchmark
M. Wagner
Beat-Peter Müller-Stich
A. Kisilenko
Duc Tran
P. Heger
...
M. Frankenberg
F. Mathis-Ullrich
Lena Maier-Hein
Stefanie Speidel
S. Bodenstedt
243
111
0
30 Sep 2021
Exploring Deep Learning Methods for Real-Time Surgical Instrument
  Segmentation in Laparoscopy
Exploring Deep Learning Methods for Real-Time Surgical Instrument Segmentation in Laparoscopy
Debesh Jha
Sharib Ali
Nikhil Kumar Tomar
Michael A. Riegler
Dag Johansen
Haavard D. Johansen
Pål Halvorsen
201
14
0
05 Jul 2021
How can we learn (more) from challenges? A statistical approach to
  driving future algorithm development
How can we learn (more) from challenges? A statistical approach to driving future algorithm development
T. Ross
Pierangela Bruno
Annika Reinke
Manuel Wiesenfarth
Lisa Koeppel
...
S. Moccia
Francesco Calimeri
Beat P. Müller-Stich
A. Kopp-Schneider
Lena Maier-Hein
AAML
169
8
0
17 Jun 2021
Assessing YOLACT++ for real time and robust instance segmentation of
  medical instruments in endoscopic procedures
Assessing YOLACT++ for real time and robust instance segmentation of medical instruments in endoscopic proceduresAnnual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2021
Juan Carlos Angeles Ceron
Leonardo Chang
Gilberto Ochoa-Ruiz
Sharib Ali
232
21
0
30 Mar 2021
SERV-CT: A disparity dataset from CT for validation of endoscopic 3D
  reconstruction
SERV-CT: A disparity dataset from CT for validation of endoscopic 3D reconstruction
P. J. Eddie Edwards
Dimitris Psychogyios
Stefanie Speidel
Lena Maier-Hein
Danail Stoyanov
322
52
0
22 Dec 2020
Multi-frame Feature Aggregation for Real-time Instrument Segmentation in
  Endoscopic Video
Multi-frame Feature Aggregation for Real-time Instrument Segmentation in Endoscopic VideoIEEE Robotics and Automation Letters (RA-L), 2020
Shan Lin
Fangbo Qin
Haonan Peng
Randall Bly
K. Moe
Blake Hannaford
283
26
0
17 Nov 2020
Surgical Data Science -- from Concepts toward Clinical Translation
Surgical Data Science -- from Concepts toward Clinical Translation
Lena Maier-Hein
Matthias Eisenmann
Duygu Sarikaya
Keno Marz
Toby Collins
...
D. Teber
F. Uckert
Beat P. Müller-Stich
Pierre Jannin
Stefanie Speidel
AI4CE
223
292
0
30 Oct 2020
EXACT: A collaboration toolset for algorithm-aided annotation of images
  with annotation version control
EXACT: A collaboration toolset for algorithm-aided annotation of images with annotation version controlScientific Reports (Sci Rep), 2020
Christian Marzahl
Marc Aubreville
C. Bertram
Jennifer K. Maier
Christian Bergler
Christine Kröger
J. Voigt
Katharina Breininger
R. Klopfleisch
Andreas Maier
226
42
0
30 Apr 2020
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