Profile Prediction: An Alignment-Based Pre-Training Task for Protein Sequence Models

1 December 2020

Pascal Sturmfels

Papers citing "Profile Prediction: An Alignment-Based Pre-Training Task for Protein Sequence Models"

10 / 10 papers shown

Title
Prot42: a Novel Family of Protein Language Models for Target-aware Protein Binder Generation Mohammad Amaan Sayeed Engin Tekin Maryam Nadeem Nancy A. ElNaker A. Singh Natalia Vassilieva Boulbaba Ben Amor 26 0 0 06 Apr 2025
DPLM-2: A Multimodal Diffusion Protein Language Model X. Wang Zaixiang Zheng Fei Ye Dongyu Xue Shujian Huang Quanquan Gu 25 13 0 17 Oct 2024
MSAGPT: Neural Prompting Protein Structure Prediction via MSA Generative Pre-Training Bo Chen Zhilei Bei Xingyi Cheng Pan Li Jie Tang Le Song 37 4 0 08 Jun 2024
A Hierarchical Training Paradigm for Antibody Structure-sequence Co-design Fang Wu Stan Z. Li 27 17 0 30 Oct 2023
Structure-informed Language Models Are Protein Designers Zaixiang Zheng Yifan Deng Dongyu Xue Yi Zhou YE Fei Quanquan Gu 26 87 0 03 Feb 2023
A Survey on Protein Representation Learning: Retrospect and Prospect Lirong Wu Yu-Feng Huang H. Lin Stan Z. Li AI4TS 26 12 0 31 Dec 2022
Protein Language Models and Structure Prediction: Connection and Progression Bozhen Hu Jun-Xiong Xia Jiangbin Zheng Cheng Tan Yufei Huang Yongjie Xu Stan Z. Li 19 40 0 30 Nov 2022
CoSP: Co-supervised pretraining of pocket and ligand Zhangyang Gao Cheng Tan Lirong Wu Stan Z. Li 21 19 0 23 Jun 2022
Pre-training Co-evolutionary Protein Representation via A Pairwise Masked Language Model Liang He Shizhuo Zhang Lijun Wu Huanhuan Xia Fusong Ju ... Jianwei Zhu Pan Deng Bin Shao Tao Qin Tie-Yan Liu 26 31 0 29 Oct 2021
Pre-trained Language Models in Biomedical Domain: A Systematic Survey Benyou Wang Qianqian Xie Jiahuan Pei Zhihong Chen Prayag Tiwari Zhao Li Jie Fu LM&MA AI4CE 37 163 0 11 Oct 2021