A Survey on Graph-Based Deep Learning for Computational Histopathology

1 July 2021

David Ahmedt-Aristizabal

Papers citing "A Survey on Graph-Based Deep Learning for Computational Histopathology"

39 / 39 papers shown

Title
A New Era in Computational Pathology: A Survey on Foundation and Vision-Language Models Dibaloke Chanda Milan Aryal Nasim Yahya Soltani Masoud Ganji AI4CE VLM 34 7 0 23 Aug 2024
Derivation of Back-propagation for Graph Convolutional Networks using Matrix Calculus and its Application to Explainable Artificial Intelligence Yen-Che Hsiao Rongting Yue Abhishek Dutta FAtt 25 0 0 02 Aug 2024
A Survey on Cell Nuclei Instance Segmentation and Classification: Leveraging Context and Attention João D. Nunes D. Montezuma Domingos Oliveira Tania Pereira Jaime S. Cardoso 49 1 0 26 Jul 2024
Generative Modelling of Structurally Constrained Graphs Manuel Madeira Clément Vignac D. Thanou Pascal Frossard DiffM 46 0 0 25 Jun 2024
Graph Neural Networks in Histopathology: Emerging Trends and Future Directions Siemen Brussee Giorgio Buzzanca Anne M.R. Schrader Jesper Kers 55 8 0 18 Jun 2024
Integrative Graph-Transformer Framework for Histopathology Whole Slide Image Representation and Classification Zhan Shi Jingwei Zhang Jun Kong Fusheng Wang MedIm 34 3 0 26 Mar 2024
Dynamic Graph Representation with Knowledge-aware Attention for Histopathology Whole Slide Image Analysis Jiawen Li Yuxuan Chen Hongbo Chu Qiehe Sun Tian Guan Anjia Han Yonghong He 29 25 0 12 Mar 2024
Harnessing Intra-group Variations Via a Population-Level Context for Pathology Detection P. B. Githinji Xi Yuan Zhenglin Chen I. Gul Dingqi Shang ... Jianming Deng Dan Zeng Dongmei Yu Chenggang Yan Peiwu Qin 33 0 0 04 Mar 2024
HistoSegCap: Capsules for Weakly-Supervised Semantic Segmentation of Histological Tissue Type in Whole Slide Images Mobina Mansoori Sajjad Shahabodini J. Abouei Arash Mohammadi Konstantinos N. Plataniotis 24 0 0 16 Feb 2024
TIAViz: A Browser-based Visualization Tool for Computational Pathology Models Mark Eastwood Johnathan Pocock Mostafa Jahanifar A. Shephard Skiros Habib ... Abdullah Alsalemi J. Robertus Nasir M. Rajpoot S. Raza F. Minhas 10 0 0 15 Feb 2024
GRASP: GRAph-Structured Pyramidal Whole Slide Image Representation Ali Khajegili Mirabadi Graham Archibald Amirali Darbandsari A. Contreras-Sanz Ramin Nakhli ... C. Gilks Peter C Black Gang Wang H. Farahani A. Bashashati 32 5 0 06 Feb 2024
Siamese Content-based Search Engine for a More Transparent Skin and Breast Cancer Diagnosis through Histological Imaging Zahra Tabatabaei Adrián Colomer Javier Oliver Moll Valery Naranjo 18 1 0 16 Jan 2024
Efficient Parameter Optimisation for Quantum Kernel Alignment: A Sub-sampling Approach in Variational Training M. E. Sahin Benjamin C. B. Symons Pushpak Pati F. Minhas Declan Millar M. Gabrani J. Robertus Stefano Mensa 29 5 0 05 Jan 2024
On the calibration of neural networks for histological slide-level classification Alexander Kurz H. A. Mehrtens Tabea-Clara Bucher T. Brinker UQCV MedIm 28 0 0 15 Dec 2023
Artificial Intelligence for Digital and Computational Pathology Andrew H. Song Guillaume Jaume Drew F. K. Williamson Ming Y. Lu Anurag J. Vaidya Tiffany R. Miller Faisal Mahmood AI4CE 30 129 0 13 Dec 2023
Tertiary Lymphoid Structures Generation through Graph-based Diffusion Manuel Madeira D. Thanou Pascal Frossard MedIm 25 1 0 10 Oct 2023
MUSTANG: Multi-Stain Self-Attention Graph Multiple Instance Learning Pipeline for Histopathology Whole Slide Images Amaya Gallagher-Syed Luca Rossi F. Rivellese C. Pitzalis M. Lewis Michael Barnes Gregory Slabaugh 22 0 0 19 Sep 2023
Histopathology Whole Slide Image Analysis with Heterogeneous Graph Representation Learning Tsai Hor Chan Fernando Julio Cendra Lan Ma Guosheng Yin Lequan Yu 28 44 0 09 Jul 2023
Explainable and Position-Aware Learning in Digital Pathology Milan Aryal Nasim Yahyasoltani MedIm 16 0 0 14 Jun 2023
Context-Aware Self-Supervised Learning of Whole Slide Images Milan Aryal Nasim Yahya Soltani 14 5 0 07 Jun 2023
Multimodal Data Integration for Oncology in the Era of Deep Neural Networks: A Review Asim Waqas Aakash Tripathi Ravichandran Ramachandran Paul Stewart Ghulam Rasool AI4CE 32 31 0 11 Mar 2023
Multi-Scale Relational Graph Convolutional Network for Multiple Instance Learning in Histopathology Images Roozbeh Bazargani L. Fazli L. Goldenberg M. Gleave A. Bashashati Septimiu Salcudean MedIm 28 7 0 17 Dec 2022
Automated Coronary Arteries Labeling Via Geometric Deep Learning Yadan Li M. Armin Simon Denman David Ahmedt-Aristizabal 21 2 0 01 Dec 2022
An Aggregation of Aggregation Methods in Computational Pathology M. Bilal R. Jewsbury Ruoyu Wang Hammam M. AlGhamdi Amina Asif Mark Eastwood Nasir M. Rajpoot 24 28 0 02 Nov 2022
RGMIM: Region-Guided Masked Image Modeling for Learning Meaningful Representation from X-Ray Images Guang Li Ren Togo Takahiro Ogawa Miki Haseyama 10 0 0 01 Nov 2022
Nuclei & Glands Instance Segmentation in Histology Images: A Narrative Review Esha Sadia Nasir Arshi Parvaiz M. Fraz 21 14 0 26 Aug 2022
Scale dependant layer for self-supervised nuclei encoding Peter Naylor Yao-Hung Hubert Tsai Marick Laé Makoto Yamada SSL 28 0 0 22 Jul 2022
Multi stain graph fusion for multimodal integration in pathology Chaitanya Dwivedi Shima Nofallah Maryam Pouryahya Janani Iyer K. Leidal ... T. Watkins A. Billin R. Myers J. Abel A. Behrooz 20 18 0 26 Apr 2022
Continuous Human Action Recognition for Human-Machine Interaction: A Review Harshala Gammulle David Ahmedt-Aristizabal Simon Denman Lachlan Tychsen-Smith L. Petersson Clinton Fookes 35 25 0 26 Feb 2022
Towards the Explanation of Graph Neural Networks in Digital Pathology with Information Flows Junchi Yu Tingyang Xu Ran He 31 5 0 18 Dec 2021
HistoCartography: A Toolkit for Graph Analytics in Digital Pathology Guillaume Jaume Pushpak Pati Valentin Anklin A. Foncubierta M. Gabrani 24 45 0 21 Jul 2021
Graph-Based Deep Learning for Medical Diagnosis and Analysis: Past, Present and Future David Ahmedt-Aristizabal M. Armin Simon Denman Clinton Fookes L. Petersson 16 177 0 27 May 2021
L $^2$ -GCN: Layer-Wise and Learned Efficient Training of Graph Convolutional Networks Yuning You Tianlong Chen Zhangyang Wang Yang Shen GNN 98 82 0 30 Mar 2020
Benchmarking Graph Neural Networks Vijay Prakash Dwivedi Chaitanya K. Joshi Anh Tuan Luu T. Laurent Yoshua Bengio Xavier Bresson 189 914 0 02 Mar 2020
CGC-Net: Cell Graph Convolutional Network for Grading of Colorectal Cancer Histology Images Yanning Zhou S. Graham Navid Alemi Koohbanani Muhammad Shaban Pheng-Ann Heng Nasir M. Rajpoot MedIm 27 173 0 03 Sep 2019
Graph-Based Global Reasoning Networks Yunpeng Chen Marcus Rohrbach Zhicheng Yan Shuicheng Yan Jiashi Feng Yannis Kalantidis GNN NAI 266 457 0 30 Nov 2018
Representation Learning on Graphs with Jumping Knowledge Networks Keyulu Xu Chengtao Li Yonglong Tian Tomohiro Sonobe Ken-ichi Kawarabayashi Stefanie Jegelka GNN 267 1,944 0 09 Jun 2018
Graph Convolutional Policy Network for Goal-Directed Molecular Graph Generation Jiaxuan You Bowen Liu Rex Ying Vijay S. Pande J. Leskovec GNN 200 885 0 07 Jun 2018
A Survey on Deep Learning in Medical Image Analysis G. Litjens Thijs Kooi B. Bejnordi A. Setio F. Ciompi Mohsen Ghafoorian Jeroen van der Laak Bram van Ginneken C. I. Sánchez OOD 280 10,613 0 19 Feb 2017