Modeling Protein Using Large-scale Pretrain Language Model

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Modeling Protein Using Large-scale Pretrain Language Model

17 August 2021

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Papers citing "Modeling Protein Using Large-scale Pretrain Language Model"

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Title
Elucidating the Design Space of Multimodal Protein Language Models Cheng-Yen Hsieh Xinze Wang Daiheng Zhang Dongyu Xue Fei Ye Shujian Huang Zaixiang Zheng Quanquan Gu 337 4 0 15 Apr 2025
Protein Large Language Models: A Comprehensive Survey Yijia Xiao Wanjia Zhao Junkai Zhang Yiqiao Jin Han Zhang ... Xiao Luo Yu Zhang James Zou Yizhou Sun Wei Wang LM&MA AI4CE 368 15 0 21 Feb 2025
RNA-GPT: Multimodal Generative System for RNA Sequence Understanding Yijia Xiao Edward Sun Yiqiao Jin Wenjie Wang LM&MA 120 3 0 29 Oct 2024
DPLM-2: A Multimodal Diffusion Protein Language ModelInternational Conference on Learning Representations (ICLR), 2024 Xinze Wang Zaixiang Zheng Fei Ye Dongyu Xue Shujian Huang Quanquan Gu 158 47 0 17 Oct 2024
ProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding Yijia Xiao Edward Sun Yiqiao Jin Qifan Wang Wei Wang 204 25 0 21 Aug 2024
ProLLM: Protein Chain-of-Thoughts Enhanced LLM for Protein-Protein Interaction Prediction Haoyang Ling Haochen Xue Zhenting Wang Boming Kang Ruosong Ye Kaixiong Zhou Jundong Li Yongfeng Zhang LLMAG 258 23 0 30 Mar 2024
CALF: Aligning LLMs for Time Series Forecasting via Cross-modal Fine-TuningAAAI Conference on Artificial Intelligence (AAAI), 2024 Peiyuan Liu Hang Guo Tao Dai Naiqi Li Jigang Bao Xudong Ren Yong Jiang Shu-Tao Xia AI4TS 334 74 0 12 Mar 2024
xTrimoGene: An Efficient and Scalable Representation Learner for Single-Cell RNA-Seq DatabioRxiv (bioRxiv), 2023 Jing Gong Minsheng Hao Xingyi Cheng Xin Zeng Chiming Liu Jianzhu Ma Xuegong Zhang Taifeng Wang Leo T. Song 223 35 0 26 Nov 2023
Better to Ask in English: Cross-Lingual Evaluation of Large Language Models for Healthcare Queries Yiqiao Jin Mohit Chandra Gaurav Verma Yibo Hu Munmun De Choudhury Srijan Kumar LM&MA ELM 365 109 0 19 Oct 2023
PGraphDTA: Improving Drug Target Interaction Prediction using Protein Language Models and Contact Maps Rakesh Bal Yijia Xiao Wei Wang 123 5 0 06 Oct 2023
Otter-Knowledge: benchmarks of multimodal knowledge graph representation learning from different sources for drug discovery Hoang Thanh Lam M. Sbodio Marcos Martínez Galindo Mykhaylo Zayats Raúl Fernández-Díaz Víctor Valls Gabriele Picco Cesar Berrospi Ramis V. López 239 11 0 22 Jun 2023
Exploring the Protein Sequence Space with Global Generative ModelsCold Spring Harbor Perspectives in Biology (Cold Spring Harb Perspect Biol), 2023 S. Romero-Romero Sebastian Lindner Noelia Ferruz 169 5 0 03 May 2023
BloombergGPT: A Large Language Model for Finance Shijie Wu Ozan Irsoy Steven Lu Vadim Dabravolski Mark Dredze Sebastian Gehrmann P. Kambadur David S. Rosenberg Gideon Mann AIFin 534 1,082 0 30 Mar 2023
Structure-informed Language Models Are Protein DesignersbioRxiv (bioRxiv), 2023 Zaixiang Zheng Yifan Deng Dongyu Xue Yi Zhou YE Fei Quanquan Gu 299 118 0 03 Feb 2023
A Survey on Protein Representation Learning: Retrospect and Prospect Lirong Wu Yu-Feng Huang H. Lin Stan Z. Li AI4TS 161 14 0 31 Dec 2022
HelixFold-Single: MSA-free Protein Structure Prediction by Using Protein Language Model as an AlternativeNature Machine Intelligence (Nat. Mach. Intell.), 2022 Xiaomin Fang Fan Wang Lihang Liu Jingzhou He Dayong Lin Yingfei Xiang Xiaonan Zhang Hua Wu Hui Li Le Song 137 66 0 28 Jul 2022
OntoProtein: Protein Pretraining With Gene Ontology EmbeddingInternational Conference on Learning Representations (ICLR), 2022 Ningyu Zhang Zhen Bi Xiaozhuan Liang Shuyang Cheng Haosen Hong Shumin Deng J. Lian Qiang Zhang Huajun Chen 388 117 0 23 Jan 2022
Pre-training Co-evolutionary Protein Representation via A Pairwise Masked Language Model Liang He Shizhuo Zhang Lijun Wu Huanhuan Xia Fusong Ju ... Jianwei Zhu Pan Deng Jia Zhang Tao Qin Tie-Yan Liu 187 35 0 29 Oct 2021
Pre-trained Language Models in Biomedical Domain: A Systematic SurveyACM Computing Surveys (CSUR), 2021 Benyou Wang Qianqian Xie Jiahuan Pei Zhihong Chen Prayag Tiwari Zhao Li Jie Fu LM&MA AI4CE 358 200 0 11 Oct 2021