Spike2Vec: An Efficient and Scalable Embedding Approach for COVID-19 Spike Sequences

12 September 2021

Sarwan Ali

Papers citing "Spike2Vec: An Efficient and Scalable Embedding Approach for COVID-19 Spike Sequences"

29 / 29 papers shown

Title
Sequence Analysis Using the Bezier Curve Taslim Murad Sarwan Ali Murray Patterson 58 0 0 18 Mar 2025
Converting Time Series Data to Numeric Representations Using Alphabetic Mapping and k-mer strategy Sarwan Ali Tamkanat E. Ali I. Khan Murray Patterson AI4TS 37 0 0 31 Dec 2024
MIK: Modified Isolation Kernel for Biological Sequence Visualization, Classification, and Clustering Sarwan Ali Prakash Chourasia Haris Mansoor Bipin Koirala Murray Patterson 57 0 0 21 Oct 2024
Position Specific Scoring Is All You Need? Revisiting Protein Sequence Classification Tasks Sarwan Ali Taslim Murad Prakash Chourasia Haris Mansoor I. Khan Pin-Yu Chen Murray Patterson 21 1 0 16 Oct 2024
DANCE: Deep Learning-Assisted Analysis of Protein Sequences Using Chaos Enhanced Kaleidoscopic Images Taslim Murad Prakash Chourasia Sarwan Ali Murray Patterson 13 3 0 10 Sep 2024
Nearest Neighbor CCP-Based Molecular Sequence Analysis Sarwan Ali Prakash Chourasia Bipin Koirala Murray Patterson 16 1 0 07 Sep 2024
Beyond Accuracy: Measuring Representation Capacity of Embeddings to Preserve Structural and Contextual Information Sarwan Ali 22 0 0 20 Sep 2023
Sequence-Based Nanobody-Antigen Binding Prediction Usama Sardar Sarwan Ali Muhammad Sohaib Ayub Muhammad Shoaib Khurram Bashir Imdadullah Khan Murray Patterson 15 3 0 15 Jul 2023
T Cell Receptor Protein Sequences and Sparse Coding: A Novel Approach to Cancer Classification Z. Tayebi Sarwan Ali Prakash Chourasia Taslim Murad Murray Patterson MedIm 6 0 0 25 Apr 2023
Virus2Vec: Viral Sequence Classification Using Machine Learning Sarwan Ali B. Bello Prakash Chourasia Ria Thazhe Punathil Pin-Yu Chen Imdadullah Khan Murray Patterson 20 2 0 24 Apr 2023
PCD2Vec: A Poisson Correction Distance-Based Approach for Viral Host Classification Sarwan Ali Taslim Murad Murray Patterson 11 0 0 13 Apr 2023
ViralVectors: Compact and Scalable Alignment-free Virome Feature Generation Sarwan Ali Prakash Chourasia Z. Tayebi B. Bello Murray Patterson 12 6 0 06 Apr 2023
BioSequence2Vec: Efficient Embedding Generation For Biological Sequences Sarwan Ali Usama Sardar Murray Patterson Imdadullah Khan 13 1 0 01 Apr 2023
Exploring The Potential Of GANs In Biological Sequence Analysis Taslim Murad Sarwan Ali Murray Patterson 8 9 0 04 Mar 2023
Efficient Classification of SARS-CoV-2 Spike Sequences Using Federated Learning Prakash Chourasia Taslim Murad Z. Tayebi Sarwan Ali Imdadullah Khan Murray Patterson FedML 21 5 0 17 Feb 2023
Anderson Acceleration For Bioinformatics-Based Machine Learning Sarwan Ali Prakash Chourasia Murray Patterson 14 2 0 01 Feb 2023
Evaluating COVID-19 Sequence Data Using Nearest-Neighbors Based Network Model Sarwan Ali 4 5 0 19 Nov 2022
Informative Initialization and Kernel Selection Improves t-SNE for Biological Sequences Prakash Chourasia Sarwan Ali Murray Patterson 11 14 0 16 Nov 2022
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data Prakash Chourasia Sarwan Ali Simone Ciccolella G. D. Vedova Murray Patterson 14 9 0 15 Nov 2022
Efficient Approximate Kernel Based Spike Sequence Classification Sarwan Ali Bikram Sahoo Muhammad Asad Khan A. Zelikovsky Imdadullah Khan Murray Patterson AI4TS 26 22 0 11 Sep 2022
Information We Can Extract About a User From Óne Minute Mobile Application Usage' Sarwan Ali 18 2 0 27 Jul 2022
Benchmarking Machine Learning Robustness in Covid-19 Genome Sequence Classification Sarwan Ali Bikram Sahoo Alexander Zelikovskiy Pin-Yu Chen Murray Patterson OOD AAML 14 19 0 18 Jul 2022
PWM2Vec: An Efficient Embedding Approach for Viral Host Specification from Coronavirus Spike Sequences Sarwan Ali B. Bello Prakash Chourasia Ria Thazhe Punathil Yijing Zhou M. Patterson 16 42 0 06 Jan 2022
Robust Representation and Efficient Feature Selection Allows for Effective Clustering of SARS-CoV-2 Variants Z. Tayebi Sarwan Ali M. Patterson 9 19 0 18 Oct 2021
Efficient Analysis of COVID-19 Clinical Data using Machine Learning Models Sarwan Ali Yijing Zhou M. Patterson OOD 8 32 0 18 Oct 2021
Characterizing SARS-CoV-2 Spike Sequences Based on Geographical Location Sarwan Ali B. Bello Z. Tayebi Murray Patterson 32 2 0 02 Oct 2021
Locally Weighted Mean Phase Angle (LWMPA) Based Tone Mapping Quality Index (TMQI-3) Inaam Ul Hassan A. Haseeb Sarwan Ali 19 1 0 17 Sep 2021
A k-mer Based Approach for SARS-CoV-2 Variant Identification Sarwan Ali Bikram Sahoo N. Ullah Alexander Zelikovskiy M. Patterson Imdadullah Khan 54 39 0 07 Aug 2021
Detecting DDoS Attack on SDN Due to Vulnerabilities in OpenFlow Sarwan Ali Maria K. Alvi S. Faizullah Muhammad Asad Khan Abdullah Alshanqiti Imdadullah Khan 18 35 0 27 Dec 2019