Title
DPLM-2: A Multimodal Diffusion Protein Language Model X. Wang Zaixiang Zheng Fei Ye Dongyu Xue Shujian Huang Quanquan Gu 25 13 0 17 Oct 2024
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Beyond ESM2: Graph-Enhanced Protein Sequence Modeling with Efficient Clustering Shu-Lin Jiao Bingxuan Li Lei Wang Xiaojin Zhang Wei Chen J. Peng Zhongyu Wei 20 1 0 24 Apr 2024
Masked Modeling for Self-supervised Representation Learning on Vision and Beyond Siyuan Li Luyuan Zhang Zedong Wang Di Wu Lirong Wu ... Jun-Xiong Xia Cheng Tan Yang Liu Baigui Sun Stan Z. Li SSL 33 14 0 31 Dec 2023
A Hierarchical Training Paradigm for Antibody Structure-sequence Co-design Fang Wu Stan Z. Li 27 17 0 30 Oct 2023
A Systematic Study of Joint Representation Learning on Protein Sequences and Structures Zuobai Zhang Chuanrui Wang Minghao Xu Vijil Chenthamarakshan A. Lozano Payel Das Jian Tang 27 30 0 11 Mar 2023
Retrieved Sequence Augmentation for Protein Representation Learning Chang Ma Haiteng Zhao Lin Zheng Jiayi Xin Qintong Li Lijun Wu Zhihong Deng Yang Lu Qi Liu Lingpeng Kong AI4TS 24 9 0 24 Feb 2023
Structure-informed Language Models Are Protein Designers Zaixiang Zheng Yifan Deng Dongyu Xue Yi Zhou YE Fei Quanquan Gu 24 87 0 03 Feb 2023
A Survey on Protein Representation Learning: Retrospect and Prospect Lirong Wu Yu-Feng Huang H. Lin Stan Z. Li AI4TS 26 12 0 31 Dec 2022
Protein Language Models and Structure Prediction: Connection and Progression Bozhen Hu Jun-Xiong Xia Jiangbin Zheng Cheng Tan Yufei Huang Yongjie Xu Stan Z. Li 19 40 0 30 Nov 2022
Training self-supervised peptide sequence models on artificially chopped proteins Gil Sadeh Zichen Wang J. Grewal Huzefa Rangwala Layne Price 19 2 0 09 Nov 2022
Incorporating Pre-training Paradigm for Antibody Sequence-Structure Co-design Kaiyuan Gao Lijun Wu Jinhua Zhu Tianbo Peng Yingce Xia ... Shufang Xie Tao Qin Haiguang Liu Kun He Tie-Yan Liu 24 9 0 26 Oct 2022
PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence Understanding Minghao Xu Zuobai Zhang Jiarui Lu Zhaocheng Zhu Yang Zhang Chang Ma Runcheng Liu Jian Tang 11 98 0 05 Jun 2022
Protein Representation Learning by Geometric Structure Pretraining Zuobai Zhang Minghao Xu Arian R. Jamasb Vijil Chenthamarakshan A. Lozano Payel Das Jian Tang SSL 13 217 0 11 Mar 2022