Papers citing 'PWM2Vec: An Efficient Embedding Approach for Viral Host Specification from Coronavirus Spike Sequences'

Title
Breaking the Euclidean Barrier: Hyperboloid-Based Biological Sequence Analysis Sarwan Ali Haris Mansoor Murray Patterson 76 0 0 01 Oct 2025
MIK: Modified Isolation Kernel for Biological Sequence Visualization, Classification, and Clustering Sarwan Ali Prakash Chourasia Haris Mansoor Bipin Koirala Murray Patterson 751 0 0 21 Oct 2024
Position Specific Scoring Is All You Need? Revisiting Protein Sequence Classification TasksRECOMB Comparative Genomics Satellite Conference (RECOMB-CG), 2024 Sarwan Ali Taslim Murad Prakash Chourasia Haris Mansoor I. Khan Pin-Yu Chen Murray Patterson 120 1 0 16 Oct 2024
DANCE: Deep Learning-Assisted Analysis of Protein Sequences Using Chaos Enhanced Kaleidoscopic Images Taslim Murad Prakash Chourasia Sarwan Ali I. Khan Murray Patterson 248 4 0 10 Sep 2024
Nearest Neighbor CCP-Based Molecular Sequence Analysis Sarwan Ali Prakash Chourasia Bipin Koirala Murray Patterson 180 1 0 07 Sep 2024
A Universal Non-Parametric Approach For Improved Molecular Sequence Analysis Sarwan Ali Tamkanat E. Ali Prakash Chourasia Murray Patterson 109 2 0 12 Feb 2024
Beyond Accuracy: Measuring Representation Capacity of Embeddings to Preserve Structural and Contextual Information Sarwan Ali 158 0 0 20 Sep 2023
Sequence-Based Nanobody-Antigen Binding PredictionInternational Symposium on Bioinformatics Research and Applications (ISBRA), 2023 Usama Sardar Sarwan Ali Muhammad Sohaib Ayub Muhammad Shoaib Khurram Bashir Imdadullah Khan Murray Patterson 119 4 0 15 Jul 2023
T Cell Receptor Protein Sequences and Sparse Coding: A Novel Approach to Cancer ClassificationInternational Conference on Neural Information Processing (ICONIP), 2023 Z. Tayebi Sarwan Ali Prakash Chourasia Taslim Murad Murray Patterson MedIm 115 3 0 25 Apr 2023
Virus2Vec: Viral Sequence Classification Using Machine Learning Sarwan Ali B. Bello Prakash Chourasia Ria Thazhe Punathil Pin-Yu Chen Imdadullah Khan Murray Patterson 109 4 0 24 Apr 2023
ViralVectors: Compact and Scalable Alignment-free Virome Feature GenerationMedical and Biological Engineering and Computing (MBEC), 2023 Sarwan Ali Prakash Chourasia Z. Tayebi B. Bello Murray Patterson 167 6 0 06 Apr 2023
BioSequence2Vec: Efficient Embedding Generation For Biological SequencesPacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD), 2023 Sarwan Ali Usama Sardar Murray Patterson Imdadullah Khan 161 1 0 01 Apr 2023
Exploring The Potential Of GANs In Biological Sequence Analysis Taslim Murad Sarwan Ali Murray Patterson 100 12 0 04 Mar 2023
Seq-HyGAN: Sequence Classification via Hypergraph Attention NetworkInternational Conference on Information and Knowledge Management (CIKM), 2023 Khaled Mohammed Saifuddin Corey May Farhan Tanvir Muhammad Ifte Khairul Islam Esra Akbas GNN 151 12 0 04 Mar 2023
Efficient Classification of SARS-CoV-2 Spike Sequences Using Federated Learning Prakash Chourasia Taslim Murad Z. Tayebi Sarwan Ali Imdadullah Khan Murray Patterson FedML 206 6 0 17 Feb 2023
Evaluating COVID-19 Sequence Data Using Nearest-Neighbors Based Network Model Sarwan Ali 182 6 0 19 Nov 2022
Informative Initialization and Kernel Selection Improves t-SNE for Biological Sequences Prakash Chourasia Sarwan Ali Murray Patterson 90 16 0 16 Nov 2022
Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data Prakash Chourasia Sarwan Ali Simone Ciccolella G. D. Vedova Murray Patterson 112 10 0 15 Nov 2022
Efficient Approximate Kernel Based Spike Sequence ClassificationIEEE/ACM Transactions on Computational Biology & Bioinformatics (TCBB), 2022 Sarwan Ali Bikram Sahoo Muhammad Asad Khan A. Zelikovsky Imdadullah Khan Murray Patterson AI4TS 150 25 0 11 Sep 2022
Benchmarking Machine Learning Robustness in Covid-19 Genome Sequence ClassificationScientific Reports (Sci Rep), 2022 Sarwan Ali Bikram Sahoo Alexander Zelikovskiy Pin-Yu Chen Murray Patterson OOD AAML 123 23 0 18 Jul 2022