Title
PyTDC: A multimodal machine learning training, evaluation, and inference platform for biomedical foundation models Alejandro Velez-Arce Marinka Zitnik 24 0 0 08 May 2025
BioMaze: Benchmarking and Enhancing Large Language Models for Biological Pathway Reasoning Haiteng Zhao Chang Ma FangZhi Xu Lingpeng Kong Zhi-Hong Deng LRM 44 2 0 23 Feb 2025
Evaluating representation learning on the protein structure universe Arian R. Jamasb Alex Morehead Chaitanya K. Joshi Zuobai Zhang Kieran Didi ... Charles Harris Jian Tang Jianlin Cheng Pietro Lio Tom L. Blundell SSL 36 12 0 19 Jun 2024
Language models in molecular discovery Chaoqi Wang Yibo Jiang Chenghao Yang Han Liu Yuxin Chen 18 7 0 28 Sep 2023
Graph Representation Learning for Interactive Biomolecule Systems Xinye Xiong Bingxin Zhou Yu Guang Wang AI4CE GNN 24 0 0 05 Apr 2023
ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts Minghao Xu Xinyu Yuan Santiago Miret Jian Tang AI4TS 25 93 0 28 Jan 2023
Distributed representations of graphs for drug pair scoring P. Scherer Pietro Lio' M. Jamnik 24 2 0 19 Sep 2022
Deep Graph Library: A Graph-Centric, Highly-Performant Package for Graph Neural Networks Minjie Wang Da Zheng Zihao Ye Quan Gan Mufei Li ... J. Zhao Haotong Zhang Alex Smola Jinyang Li Zheng-Wei Zhang AI4CE GNN 189 743 0 03 Sep 2019
Graph Convolutional Policy Network for Goal-Directed Molecular Graph Generation Jiaxuan You Bowen Liu Rex Ying Vijay S. Pande J. Leskovec GNN 189 885 0 07 Jun 2018