Exploring evolution-aware & -free protein language models as protein
function predictors

Exploring evolution-aware & -free protein language models as protein function predictors

14 June 2022

Kevin Kaichuang Yang

Papers citing "Exploring evolution-aware & -free protein language models as protein function predictors"

11 / 11 papers shown

Title
VenusFactory: A Unified Platform for Protein Engineering Data Retrieval and Language Model Fine-Tuning Y. Tan Chen Liu Jingyuan Gao Banghao Wu Mingchen Li ... Lingrong Zhang Huiqun Yu Guisheng Fan Liang Hong Bingxin Zhou 50 0 0 19 Mar 2025
Protein Large Language Models: A Comprehensive Survey Yijia Xiao Wanjia Zhao Junkai Zhang Yiqiao Jin Han Zhang ... Xiao Luo Yu-Jie Zhang James Zou Yizhou Sun Wei Wang LM&MA AI4CE 61 3 0 21 Feb 2025
Large Language Models in Drug Discovery and Development: From Disease Mechanisms to Clinical Trials Yizhen Zheng Huan Yee Koh M. Yang Li Li Lauren T. May Geoffrey I. Webb Shirui Pan George Church LM&MA 44 9 0 06 Sep 2024
Boosting Protein Language Models with Negative Sample Mining Yaoyao Xu Xinjian Zhao Xiaozhuang Song Benyou Wang Tianshu Yu 38 0 0 28 May 2024
Simple, Efficient and Scalable Structure-aware Adapter Boosts Protein Language Models Yang Tan Mingchen Li Bingxin Zhou Bozitao Zhong Lirong Zheng P. Tan Ziyi Zhou Huiqun Yu Guisheng Fan Liang Hong 26 8 0 23 Apr 2024
Endowing Protein Language Models with Structural Knowledge Dexiong Chen Philip Hartout Paolo Pellizzoni Carlos G. Oliver Karsten Borgwardt 43 12 0 26 Jan 2024
Exploring Post-Training Quantization of Protein Language Models Shuang Peng Fei Yang Ning Sun Sheng Chen Yanfeng Jiang Aimin Pan MQ 19 0 0 30 Oct 2023
InstructProtein: Aligning Human and Protein Language via Knowledge Instruction Zeyuan Wang Qiang Zhang Keyan Ding Ming Qin Zhuang Xiang Xiaotong Li Huajun Chen 22 28 0 05 Oct 2023
Pairing interacting protein sequences using masked language modeling Umberto Lupo Damiano Sgarbossa Anne-Florence Bitbol 27 10 0 14 Aug 2023
Retrieved Sequence Augmentation for Protein Representation Learning Chang Ma Haiteng Zhao Lin Zheng Jiayi Xin Qintong Li Lijun Wu Zhihong Deng Yang Lu Qi Liu Lingpeng Kong AI4TS 27 9 0 24 Feb 2023
Structure-informed Language Models Are Protein Designers Zaixiang Zheng Yifan Deng Dongyu Xue Yi Zhou YE Fei Quanquan Gu 29 87 0 03 Feb 2023