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HelixFold-Single: MSA-free Protein Structure Prediction by Using Protein
  Language Model as an Alternative
v1v2v3 (latest)

HelixFold-Single: MSA-free Protein Structure Prediction by Using Protein Language Model as an Alternative

Nature Machine Intelligence (Nat. Mach. Intell.), 2022
28 July 2022
Xiaomin Fang
Fan Wang
Lihang Liu
Jingzhou He
Dayong Lin
Yingfei Xiang
Xiaonan Zhang
Hua Wu
Hui Li
Le Song
ArXiv (abs)PDFHTMLGithub (1065★)

Papers citing "HelixFold-Single: MSA-free Protein Structure Prediction by Using Protein Language Model as an Alternative"

11 / 11 papers shown
AMix-1: A Pathway to Test-Time Scalable Protein Foundation Model
AMix-1: A Pathway to Test-Time Scalable Protein Foundation Model
Changze Lv
Jiang Zhou
Siyu Long
Lihao Wang
Jiangtao Feng
...
W. Ouyang
Ya Zhang
Wei-Ying Ma
Bowen Zhou
Hao Zhou
341
0
0
11 Jul 2025
Large Language Models for Bioinformatics
Large Language Models for BioinformaticsQuantitative Biology (QB), 2025
Wei Ruan
Yanjun Lyu
Jing Zhang
Jianfeng Cai
Peng Shu
...
Ping Ma
Hongtu Zhu
Yajun Yan
D. Zhu
Tianming Liu
AI4CELM&MA
207
15
0
10 Jan 2025
One protein is all you need
One protein is all you need
Anton Bushuiev
Roman Bushuiev
Nikola Zadorozhny
Nikola Zadorozhny
Raman Samusevich
...
Hannes Stärk
Jiri Sedlar
Martin Steinegger
Tomáš Pluskal
Josef Sivic
375
0
0
04 Nov 2024
Technical Report of HelixFold3 for Biomolecular Structure Prediction
Technical Report of HelixFold3 for Biomolecular Structure Prediction
Lihang Liu
Shanzhuo Zhang
Yang Xue
Xianbin Ye
Kunrui Zhu
...
Wenlai Zhao
Hongkun Yu
Zhihua Wu
Xinming Zhang
Xiaomin Fang
158
27
0
30 Aug 2024
Boosting Protein Language Models with Negative Sample Mining
Boosting Protein Language Models with Negative Sample Mining
Yaoyao Xu
Xinjian Zhao
Xiaozhuang Song
Benyou Wang
Tianshu Yu
202
1
0
28 May 2024
Large Language Models for Medicine: A Survey
Large Language Models for Medicine: A Survey
Yanxin Zheng
Wensheng Gan
Zefeng Chen
Zhenlian Qi
Qian Liang
Philip S. Yu
LM&MA
364
61
0
20 May 2024
HelixFold-Multimer: Elevating Protein Complex Structure Prediction to
  New Heights
HelixFold-Multimer: Elevating Protein Complex Structure Prediction to New Heights
Xiaomin Fang
Jie Gao
Jing Hu
Lihang Liu
Yang Xue
Xiaonan Zhang
Kunrui Zhu
201
9
0
16 Apr 2024
A Survey of Geometric Graph Neural Networks: Data Structures, Models and Applications
A Survey of Geometric Graph Neural Networks: Data Structures, Models and Applications
Jiaqi Han
Jiacheng Cen
Liming Wu
Zongzhao Li
Xiangzhe Kong
...
Zhewei Wei
Deli Zhao
Yu Rong
Wenbing Huang
Wenbing Huang
AI4CE
672
65
0
01 Mar 2024
Understanding the Natural Language of DNA using Encoder-Decoder
  Foundation Models with Byte-level Precision
Understanding the Natural Language of DNA using Encoder-Decoder Foundation Models with Byte-level PrecisionBioinformatics Advances (BA), 2023
Aditya Malusare
Harish Kothandaraman
Dipesh Tamboli
N. Lanman
Vaneet Aggarwal
AI4CE
294
0
0
04 Nov 2023
Pre-Training on Large-Scale Generated Docking Conformations with
  HelixDock to Unlock the Potential of Protein-ligand Structure Prediction
  Models
Pre-Training on Large-Scale Generated Docking Conformations with HelixDock to Unlock the Potential of Protein-ligand Structure Prediction Models
Lihang Liu
Shanzhuo Zhang
Donglong He
Xianbin Ye
Jingbo Zhou
...
Fan Wang
Jingzhou He
Liang Zheng
Yonghui Li
Xiaomin Fang
AI4CE
278
14
0
21 Oct 2023
ImmunoLingo: Linguistics-based formalization of the antibody language
ImmunoLingo: Linguistics-based formalization of the antibody languageNature Computational Science (Nat. Comput. Sci.), 2022
Mai Ha Vu
Philippe A. Robert
Rahmad Akbar
B. Swiatczak
G. K. Sandve
Dag Trygve Tryslew Haug
Victor Greiff
AI4CE
502
11
0
26 Sep 2022
1
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