Amortized Inference for Heterogeneous Reconstruction in Cryo-EM

Amortized Inference for Heterogeneous Reconstruction in Cryo-EM

13 October 2022

Gordon Wetzstein

Julien N. P. Martel

Frédéric Poitevin

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Papers citing "Amortized Inference for Heterogeneous Reconstruction in Cryo-EM"

16 / 16 papers shown

Title
Joint Denoising of Cryo-EM Projection Images using Polar Transformers Joakim Andén Justus Sagemüller ViT 12 0 0 12 Jun 2025
CryoFastAR: Fast Cryo-EM Ab Initio Reconstruction Made Easy Jiakai Zhang S. K. Zhou Haizhao Dai Xinhang Liu Peihao Wang Zhiwen Fan Yuan Pei Jingyi Yu 45 0 0 06 Jun 2025
CryoBench: Diverse and challenging datasets for the heterogeneity problem in cryo-EM Minkyu Jeon Rishwanth Raghu Miro A. Astore Geoffrey Woollard Ryan Feathers Alkin Kaz Sonya M. Hanson Pilar Cossio Ellen D. Zhong 94 10 0 17 Jan 2025
Mixture of neural fields for heterogeneous reconstruction in cryo-EM Axel Levy Rishwanth Raghu David Shustin Adele Rui-Yang Peng Huan Li Oliver Biggs Clarke Gordon Wetzstein Ellen D. Zhong 94 0 0 12 Dec 2024
Improving Ab-Initio Cryo-EM Reconstruction with Semi-Amortized Pose Inference Shayan Shekarforoush David B. Lindell Marcus A. Brubaker David J. Fleet 54 2 0 15 Jun 2024
Equivariant amortized inference of poses for cryo-EM Larissa de Ruijter Gabriele Cesa 97 1 0 01 Jun 2024
DualContrast: Unsupervised Disentangling of Content and Transformations with Implicit Parameterization M. R. Uddin Min Xu 155 0 0 27 May 2024
$Scalable 3D Reconstruction From Single Particle X-Ray Diffraction Images Based on Online Machine Learning$ Scalable 3D Reconstruction From Single Particle X-Ray Diffraction Images Based on Online Machine Learning Jay Shenoy Axel Levy Frédéric Poitevin Gordon Wetzstein 29 2 0 22 Dec 2023
GenEM: Physics-Informed Generative Cryo-Electron Microscopy Jiakai Zhang Qihe Chen Yan Zeng Wenyuan Gao Xuming He Zhijie Liu Jingyi Yu DiffM 53 2 0 04 Dec 2023
Recovering a Molecule's 3D Dynamics from Liquid-phase Electron Microscopy Movies E. Ye Yuhang Wang Hong Zhang Y. Gao Huan Wang H. Sun 72 2 0 23 Aug 2023
Improved Cryo-EM Pose Estimation and 3D Classification through Latent-Space Disentanglement Wei Chen Yuhang Wang Lin Yao DRL 40 1 0 09 Aug 2023
Cryo-forum: A framework for orientation recovery with uncertainty measure with the application in cryo-EM image analysis Szu-Chi Chung 58 1 0 19 Jul 2023
Capturing dynamical correlations using implicit neural representations Sathya R. Chitturi Zhurun Ji A. Petsch Cheng Peng Zhantao Chen ... S. Hayden Daniel Ratner Chunjing Jia Y. Nashed Joshua J. Turner 69 12 0 08 Apr 2023
CryoFormer: Continuous Heterogeneous Cryo-EM Reconstruction using Transformer-based Neural Representations Xinhang Liu Yan Zeng Yifan Qin Hao Li Jiakai Zhang Lan Xu Jingyi Yu ViT 55 2 0 28 Mar 2023
MELON: NeRF with Unposed Images in SO(3) Axel Levy Mark J. Matthews Matan Sela Gordon Wetzstein Dmitry Lagun 61 1 0 14 Mar 2023
Using VAEs to Learn Latent Variables: Observations on Applications in cryo-EM Daniel G Edelberg Roy R. Lederman CML DRL 56 5 0 13 Mar 2023