Protein Design with Guided Discrete Diffusion

31 May 2023

Papers citing "Protein Design with Guided Discrete Diffusion"

20 / 20 papers shown

Title
Multi-Step Consistency Models: Fast Generation with Theoretical Guarantees Nishant Jain Xunpeng Huang Yian Ma Tong Zhang 31 0 0 02 May 2025
Simplified and Generalized Masked Diffusion for Discrete Data Jiaxin Shi Kehang Han Z. Wang Arnaud Doucet Michalis K. Titsias DiffM 70 61 0 17 Jan 2025
Chemistry-Inspired Diffusion with Non-Differentiable Guidance Yuchen Shen Chenhao Zhang Sijie Fu Chenghui Zhou Newell Washburn Barnabás Póczos 40 0 0 09 Oct 2024
DiffGAD: A Diffusion-based Unsupervised Graph Anomaly Detector Jinghan Li Yuan Gao Jinda Lu Junfeng Fang Congcong Wen Hui Lin Xiang Wang 34 0 0 09 Oct 2024
Convergence of Score-Based Discrete Diffusion Models: A Discrete-Time Analysis Zikun Zhang Zixiang Chen Quanquan Gu DiffM 31 3 0 03 Oct 2024
Discrete Copula Diffusion Anji Liu Oliver Broadrick Mathias Niepert Guy Van den Broeck DiffM 37 4 0 02 Oct 2024
Variational Search Distributions Daniel M. Steinberg Rafael Oliveira Cheng Soon Ong Edwin V. Bonilla 24 0 0 10 Sep 2024
Training Greedy Policy for Proposal Batch Selection in Expensive Multi-Objective Combinatorial Optimization Deokjae Lee Hyun Oh Song Kyunghyun Cho OffRL 23 0 0 21 Jun 2024
Unlocking Guidance for Discrete State-Space Diffusion and Flow Models Hunter Nisonoff Junhao Xiong Stephan Allenspach Jennifer Listgarten 36 29 0 03 Jun 2024
Preference optimization of protein language models as a multi-objective binder design paradigm Pouria A. Mistani Venkatesh Mysore 14 6 0 07 Mar 2024
Resurrecting Recurrent Neural Networks for Long Sequences Antonio Orvieto Samuel L. Smith Albert Gu Anushan Fernando Çağlar Gülçehre Razvan Pascanu Soham De 83 258 0 11 Mar 2023
Muse: Text-To-Image Generation via Masked Generative Transformers Huiwen Chang Han Zhang Jarred Barber AJ Maschinot José Lezama ... Kevin Patrick Murphy William T. Freeman Michael Rubinstein Yuanzhen Li Dilip Krishnan DiffM 197 515 0 02 Jan 2023
DiffusER: Discrete Diffusion via Edit-based Reconstruction Machel Reid Vincent J. Hellendoorn Graham Neubig DiffM 32 39 0 30 Oct 2022
Diffusion-LM Improves Controllable Text Generation Xiang Lisa Li John Thickstun Ishaan Gulrajani Percy Liang Tatsunori B. Hashimoto AI4CE 163 768 0 27 May 2022
Protein Structure and Sequence Generation with Equivariant Denoising Diffusion Probabilistic Models N. Anand Tudor Achim DiffM 175 170 0 26 May 2022
RePaint: Inpainting using Denoising Diffusion Probabilistic Models Andreas Lugmayr Martin Danelljan Andrés Romero F. I. F. Richard Yu Radu Timofte Luc Van Gool DiffM 200 1,330 0 24 Jan 2022
"Will You Find These Shortcuts?" A Protocol for Evaluating the Faithfulness of Input Salience Methods for Text Classification Jasmijn Bastings Sebastian Ebert Polina Zablotskaia Anders Sandholm Katja Filippova 102 75 0 14 Nov 2021
Benchmarking deep generative models for diverse antibody sequence design Igor Melnyk Payel Das Vijil Chenthamarakshan A. Lozano DiffM 19 17 0 12 Nov 2021
Generalization in NLI: Ways (Not) To Go Beyond Simple Heuristics Prajjwal Bhargava Aleksandr Drozd Anna Rogers 83 101 0 04 Oct 2021
Argmax Flows and Multinomial Diffusion: Learning Categorical Distributions Emiel Hoogeboom Didrik Nielsen P. Jaini Patrick Forré Max Welling DiffM 191 392 0 10 Feb 2021