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Protein Discovery with Discrete Walk-Jump Sampling

Protein Discovery with Discrete Walk-Jump Sampling

8 June 2023
Nathan C. Frey
Daniel Berenberg
Karina Zadorozhny
J. Kleinhenz
J. Lafrance-Vanasse
I. Hotzel
Yongpeng Wu
Stephen Ra
Richard Bonneau
Kyunghyun Cho
Andreas Loukas
Vladimir Gligorijević
Saeed Saremi
    DiffM
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Papers citing "Protein Discovery with Discrete Walk-Jump Sampling"

9 / 9 papers shown
Title
DDPS: Discrete Diffusion Posterior Sampling for Paths in Layered Graphs
DDPS: Discrete Diffusion Posterior Sampling for Paths in Layered Graphs
Hao Luan
See-Kiong Ng
Chun Kai Ling
52
0
0
29 Apr 2025
Decoupled Sequence and Structure Generation for Realistic Antibody Design
Decoupled Sequence and Structure Generation for Realistic Antibody Design
Nayoung Kim
Minsu Kim
Sungsoo Ahn
Jinkyoo Park
47
0
0
20 Jan 2025
A noise-corrected Langevin algorithm and sampling by half-denoising
A noise-corrected Langevin algorithm and sampling by half-denoising
Aapo Hyvärinen
DiffM
39
1
0
08 Oct 2024
How Discrete and Continuous Diffusion Meet: Comprehensive Analysis of Discrete Diffusion Models via a Stochastic Integral Framework
How Discrete and Continuous Diffusion Meet: Comprehensive Analysis of Discrete Diffusion Models via a Stochastic Integral Framework
Yinuo Ren
Haoxuan Chen
Grant M. Rotskoff
Lexing Ying
47
3
0
04 Oct 2024
Unlocking Guidance for Discrete State-Space Diffusion and Flow Models
Unlocking Guidance for Discrete State-Space Diffusion and Flow Models
Hunter Nisonoff
Junhao Xiong
Stephan Allenspach
Jennifer Listgarten
60
31
0
03 Jun 2024
Sequence-Augmented SE(3)-Flow Matching For Conditional Protein Backbone
  Generation
Sequence-Augmented SE(3)-Flow Matching For Conditional Protein Backbone Generation
Guillaume Huguet
James Vuckovic
Kilian Fatras
Eric Thibodeau-Laufer
Pablo Lemos
...
Jarrid Rector-Brooks
Tara Akhound-Sadegh
Michael M. Bronstein
Alexander Tong
A. Bose
32
27
0
30 May 2024
Implicitly Guided Design with PropEn: Match your Data to Follow the
  Gradient
Implicitly Guided Design with PropEn: Match your Data to Follow the Gradient
Natavsa Tagasovska
Vladimir Gligorijević
Kyunghyun Cho
Andreas Loukas
DiffM
52
4
0
28 May 2024
Generative Antibody Design for Complementary Chain Pairing Sequences
  through Encoder-Decoder Language Model
Generative Antibody Design for Complementary Chain Pairing Sequences through Encoder-Decoder Language Model
S. K. Chu
K. Wei
AI4CE
19
7
0
06 Jan 2023
Concrete Score Matching: Generalized Score Matching for Discrete Data
Concrete Score Matching: Generalized Score Matching for Discrete Data
Chenlin Meng
Kristy Choi
Jiaming Song
Stefano Ermon
DiffM
192
53
0
02 Nov 2022
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