DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species
Genome

DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome

26 June 2023

Papers citing "DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome"

15 / 15 papers shown

Title
DNAZEN: Enhanced Gene Sequence Representations via Mixed Granularities of Coding Units Lei Mao Yuanhe Tian Yan Song 14 0 0 04 May 2025
Multimodal Large Language Models for Medicine: A Comprehensive Survey Jiarui Ye Hao Tang LM&MA 84 0 0 29 Apr 2025
HELM: Hierarchical Encoding for mRNA Language Modeling Mehdi Yazdani-Jahromi Mangal Prakash Tommaso Mansi Artem Moskalev Rui Liao 84 2 0 13 Mar 2025
Life-Code: Central Dogma Modeling with Multi-Omics Sequence Unification Zicheng Liu Siyuan Li Zhiyuan Chen Lei Xin Fang Wu Chang Yu Qirong Yang Yucheng Guo Y. Yang Stan Z. Li SyDa AI4CE 87 0 0 11 Feb 2025
BIOSCAN-5M: A Multimodal Dataset for Insect Biodiversity Zahra Gharaee Scott C. Lowe ZeMing Gong Pablo Millán Arias Nicholas Pellegrino ... Lila Kari Dirk Steinke Graham W. Taylor Paul Fieguth Angel X. Chang 44 7 0 28 Jan 2025
A Comprehensive Survey of Foundation Models in Medicine Wasif Khan Seowung Leem Kyle B. See Joshua K. Wong Shaoting Zhang R. Fang AI4CE LM&MA VLM 97 17 0 17 Jan 2025
Specialized Foundation Models Struggle to Beat Supervised Baselines Zongzhe Xu Ritvik Gupta Wenduo Cheng Alexander Shen Junhong Shen Ameet Talwalkar M. Khodak AI4CE 38 6 0 05 Nov 2024
Differentially Private Kernel Density Estimation Erzhi Liu Jerry Yao-Chieh Hu Alex Reneau Zhao Song Han Liu 56 3 0 03 Sep 2024
Genomic Language Models: Opportunities and Challenges Gonzalo Benegas Chengzhong Ye C. Albors Jianan Canal Li Yun S. Song AI4CE LM&MA ELM 37 18 0 16 Jul 2024
Whole Genome Transformer for Gene Interaction Effects in Microbiome Habitat Specificity Zhufeng Li S. S. Cranganore Nicholas D. Youngblut Niki Kilbertus 34 2 0 09 May 2024
Outlier-Efficient Hopfield Layers for Large Transformer-Based Models Jerry Yao-Chieh Hu Pei-Hsuan Chang Haozheng Luo Hong-Yu Chen Weijian Li Wei-Po Wang Han Liu 31 25 0 04 Apr 2024
BarcodeBERT: Transformers for Biodiversity Analysis Pablo Millán Arias Niousha Sadjadi Monireh Safari ZeMing Gong Austin T. Wang ... Iuliia Zarubiieva Dirk Steinke Lila Kari Angel X. Chang Graham W. Taylor 42 7 0 04 Nov 2023
Splicing Up Your Predictions with RNA Contrastive Learning Phil Fradkin Ruian Shi Bo Wang Brendan Frey Leo J. Lee SSL 24 0 0 12 Oct 2023
Embed-Search-Align: DNA Sequence Alignment using Transformer Models Pavan Holur K. Enevoldsen Shreyas Rajesh L. Mboning Thalia Georgiou Louis-S. Bouchard Matteo Pellegrini V. Roychowdhury 8 0 0 20 Sep 2023
Train Short, Test Long: Attention with Linear Biases Enables Input Length Extrapolation Ofir Press Noah A. Smith M. Lewis 242 695 0 27 Aug 2021