GeoPhy: Differentiable Phylogenetic Inference via Geometric Gradients of
Tree Topologies

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GeoPhy: Differentiable Phylogenetic Inference via Geometric Gradients of Tree Topologies

Neural Information Processing Systems (NeurIPS), 2023

7 July 2023

Takahiro Mimori

Michiaki Hamada

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Papers citing "GeoPhy: Differentiable Phylogenetic Inference via Geometric Gradients of Tree Topologies"

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Title
Randomized HyperSteiner: A Stochastic Delaunay Triangulation Heuristic for the Hyperbolic Steiner Minimal Tree Aniss Aiman Medbouhi Alejandro García-Castellanos Giovanni Luca Marchetti Daniël M. Pelt Erik J. Bekkers Danica Kragic 82 0 0 10 Oct 2025
Variational Combinatorial Sequential Monte Carlo for Bayesian Phylogenetics in Hyperbolic SpaceInternational Conference on Artificial Intelligence and Statistics (AISTATS), 2025 Alex Chen Philipe Chlenski Kenneth Munyuza A. Moretti C. A. Naesseth I. Pe’er 245 3 0 29 Jan 2025
Solving the Tree Containment Problem Using Graph Neural Networks A. Dushatskiy Esther Julien Leen Stougie L. Iersel 252 0 0 15 Apr 2024
Leaping through tree space: continuous phylogenetic inference for rooted and unrooted treesGenome Biology and Evolution (GBE), 2023 Matthew J. Penn Neil Scheidwasser Joseph Penn C. Donnelly D. Duchêne Samir Bhatt 245 6 0 09 Jun 2023