Modelling Cellular Perturbations with the Sparse Additive Mechanism Shift Variational Autoencoder

5 November 2023

Papers citing "Modelling Cellular Perturbations with the Sparse Additive Mechanism Shift Variational Autoencoder"

10 / 10 papers shown

Title
GRAPE: Heterogeneous Graph Representation Learning for Genetic Perturbation with Coding and Non-Coding Biotype Changxi Chi Jun-Xiong Xia Jingbo Zhou Jiabei Cheng Chang Yu Stan Z. Li 29 0 0 06 May 2025
Efficient Data Selection for Training Genomic Perturbation Models G. Panagopoulos J. Lutzeyer Sofiane Ennadir Michalis Vazirgiannis Jun Pang 89 0 0 18 Mar 2025
GPO-VAE: Modeling Explainable Gene Perturbation Responses utilizing GRN-Aligned Parameter Optimization Seungheun Baek Soyon Park Y. T. Chok Mogan Gim Jaewoo Kang DRL 40 0 0 31 Jan 2025
Efficient Fine-Tuning of Single-Cell Foundation Models Enables Zero-Shot Molecular Perturbation Prediction Sepideh Maleki Jan-Christian Huetter Kangway V Chuang Gabriele Scalia Tommaso Biancalani Tommaso Biancalani AI4CE 85 2 0 18 Dec 2024
Learning Identifiable Factorized Causal Representations of Cellular Responses Haiyi Mao Romain Lopez Kai Liu Jan-Christian Huetter David Richmond Panayiotis Benos Lin Qiu CML 22 3 0 29 Oct 2024
How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities Charlotte Bunne Yusuf Roohani Yanay Rosen Ankit Gupta Xikun Zhang ... Theofanis Karaletsos Aviv Regev Emma Lundberg J. Leskovec Stephen R. Quake 42 18 0 18 Sep 2024
Automated Discovery of Pairwise Interactions from Unstructured Data Zuheng Xu Moksh Jain Ali Denton Shawn Whitfield Aniket Didolkar Berton A. Earnshaw Jason S. Hartford 18 2 0 11 Sep 2024
CRADLE-VAE: Enhancing Single-Cell Gene Perturbation Modeling with Counterfactual Reasoning-based Artifact Disentanglement Seungheun Baek Soyon Park Y. T. Chok Junhyun Lee Jueon Park Mogan Gim Jaewoo Kang CML 30 1 0 09 Sep 2024
PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis Yan Wu Esther Wershof Sebastian M. Schmon Marcel Nassar Błażej Osiński Ridvan Eksi Kun Zhang T. Graepel 21 6 0 20 Aug 2024
sc-OTGM: Single-Cell Perturbation Modeling by Solving Optimal Mass Transport on the Manifold of Gaussian Mixtures Andac Demir E. Solovyeva James Boylan Mei Xiao Fabrizio Serluca S. Hoersch Jeremy L Jenkins Murthy S. Devarakonda B. Kiziltan 32 0 0 06 May 2024