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2311.09261
Cited By
Emerging Drug Interaction Prediction Enabled by Flow-based Graph Neural Network with Biomedical Network
Nature Computational Science (Nat. Comput. Sci.), 2023
15 November 2023
Yongqi Zhang
Quanming Yao
Ling Yue
Xian Wu
Ziheng Zhang
Zhenxi Lin
Yefeng Zheng
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Papers citing
"Emerging Drug Interaction Prediction Enabled by Flow-based Graph Neural Network with Biomedical Network"
15 / 15 papers shown
MolBridge: Atom-Level Joint Graph Refinement for Robust Drug-Drug Interaction Event Prediction
Xuan Lin
Aocheng Ding
Tengfei Ma
Hua Liang
Zhe Quan
197
0
0
23 Oct 2025
A Survey of Graph Neural Networks for Drug Discovery: Recent Developments and Challenges
Katherine Berry
Liang Cheng
AI4CE
148
0
0
09 Sep 2025
Graph Neural Networks in Modern AI-aided Drug Discovery
Chemical Reviews (Chem. Rev.), 2025
Odin Zhang
Haitao Lin
Xujun Zhang
Xiaorui Wang
Zhenxing Wu
...
Jike Wang
Kejun Ying
Yu Kang
Chang-Yu Hsieh
Tingjun Hou
GNN
AI4CE
208
33
0
07 Jun 2025
Case-Based Reasoning Enhances the Predictive Power of LLMs in Drug-Drug Interaction
Guangyi Liu
Yongqi Zhang
Xunyuan Liu
Quanming Yao
296
1
0
29 May 2025
Customized Subgraph Selection and Encoding for Drug-drug Interaction Prediction
Neural Information Processing Systems (NeurIPS), 2024
Haotong Du
Quanming Yao
Juzheng Zhang
Yong Liu
Zhen Wang
381
17
0
03 Nov 2024
Benchmarking drug-drug interaction prediction methods: a perspective of distribution changes
Bioinformatics (Bioinformatics), 2024
Zhenqian Shen
Mingyuan Zhou
Yongqi Zhang
Quanming Yao
269
0
0
24 Oct 2024
Learning from Negative Samples in Biomedical Generative Entity Linking
Annual Meeting of the Association for Computational Linguistics (ACL), 2024
Chanhwi Kim
Hyunjae Kim
Sihyeon Park
Jiwoo Lee
Mujeen Sung
Jaewoo Kang
MedIm
478
0
0
29 Aug 2024
BioMamba: Domain-Adaptive Biomedical Language Models
Ling Yue
Sixue Xing
Yingzhou Lu
Tianfan Fu
Vijil Chenthamarakshan
Yanbo Wang
Yunning Cao
Payel Das
Tianfan Fu
LM&MA
ELM
AI4CE
270
12
0
05 Aug 2024
Knowledge-Aware Parsimony Learning: A Perspective from Relational Graphs
Quanming Yao
Yongqi Zhang
Yaqing Wang
Nan Yin
James Kwok
Qiang Yang
288
0
0
29 Jun 2024
Graph Convolutional Network For Semi-supervised Node Classification With Subgraph Sketching
Zibin Huang
Jun Xian
GNN
290
0
0
19 Apr 2024
Knowledge-Enhanced Recommendation with User-Centric Subgraph Network
Guangyi Liu
Quanming Yao
Yongqi Zhang
Lei Chen
252
11
0
21 Mar 2024
Learning to Describe for Predicting Zero-shot Drug-Drug Interactions
Conference on Empirical Methods in Natural Language Processing (EMNLP), 2024
Fangqi Zhu
Yongqi Zhang
Lei Chen
Bing Qin
Ruifeng Xu
226
17
0
13 Mar 2024
Biomedical Entity Linking as Multiple Choice Question Answering
Zhenxi Lin
Ziheng Zhang
Xian Wu
Yefeng Zheng
429
4
0
23 Feb 2024
Improving Biomedical Entity Linking with Retrieval-enhanced Learning
IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP), 2023
Zhenxi Lin
Ziheng Zhang
Xian Wu
Yefeng Zheng
247
4
0
15 Dec 2023
GraphRARE: Reinforcement Learning Enhanced Graph Neural Network with Relative Entropy
IEEE International Conference on Data Engineering (ICDE), 2023
Tianhao Peng
Wenjun Wu
Haitao Yuan
Zhifeng Bao
Pengrui Zhao
Xin Yu
Xuetao Lin
Yu Liang
Yanjun Pu
432
22
0
15 Dec 2023
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