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xTrimoGene: An Efficient and Scalable Representation Learner for
  Single-Cell RNA-Seq Data
v1v2 (latest)

xTrimoGene: An Efficient and Scalable Representation Learner for Single-Cell RNA-Seq Data

bioRxiv (bioRxiv), 2023
26 November 2023
Jing Gong
Minsheng Hao
Xingyi Cheng
Xin Zeng
Chiming Liu
Jianzhu Ma
Xuegong Zhang
Taifeng Wang
Leo T. Song
ArXiv (abs)PDFHTML

Papers citing "xTrimoGene: An Efficient and Scalable Representation Learner for Single-Cell RNA-Seq Data"

7 / 7 papers shown
Title
SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics
SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics
Suyuan Zhao
Yizhen Luo
Ganbo Yang
Yan Zhong
Hao Zhou
Zaiqing Nie
221
4
0
15 Jul 2025
ChromFound: Towards A Universal Foundation Model for Single-Cell Chromatin Accessibility Data
ChromFound: Towards A Universal Foundation Model for Single-Cell Chromatin Accessibility Data
Yifeng Jiao
Yuchen Liu
Yu Zhang
Xin Guo
Yushuai Wu
...
Hongwei Zhang
Limei Han
Xin Gao
Yuan Qi
Yuan Cheng
391
1
0
19 May 2025
Bidirectional Mamba for Single-Cell Data: Efficient Context Learning with Biological Fidelity
Bidirectional Mamba for Single-Cell Data: Efficient Context Learning with Biological Fidelity
Cong Qi
Hanzhang Fang
Tianxing Hu
Siqi Jiang
Wei Zhi
Mamba
228
3
0
22 Apr 2025
Celler:A Genomic Language Model for Long-Tailed Single-Cell Annotation
Celler:A Genomic Language Model for Long-Tailed Single-Cell Annotation
Huan Zhao
Yiming Liu
Jina Yao
Ling Xiong
Zexin Zhou
Zixing Zhang
308
2
0
28 Mar 2025
eDOC: Explainable Decoding Out-of-domain Cell Types with Evidential
  Learning
eDOC: Explainable Decoding Out-of-domain Cell Types with Evidential Learning
Chaochen Wu
Meiyun Zuo
Lei Xie
225
0
0
30 Oct 2024
Large-Scale Multi-omic Biosequence Transformers for Modeling Protein-Nucleic Acid Interactions
Large-Scale Multi-omic Biosequence Transformers for Modeling Protein-Nucleic Acid Interactions
Sully F. Chen
Robert J. Steele
Glen M. Hocky
Beakal Lemeneh
S. Lad
Eric Oermann
AI4CE
279
0
0
29 Aug 2024
LangCell: Language-Cell Pre-training for Cell Identity Understanding
LangCell: Language-Cell Pre-training for Cell Identity UnderstandingInternational Conference on Machine Learning (ICML), 2024
Suyuan Zhao
Jiahuan Zhang
Yushuai Wu
Yizhen Luo
Zaiqing Nie
VLM
298
23
0
09 May 2024
1