Title
An All-Atom Generative Model for Designing Protein Complexes Ruizhe Chen Dongyu Xue Xiangxin Zhou Zaixiang Zheng Xiangxiang Zeng Quanquan Gu 19 0 0 17 Apr 2025
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ProteinBench: A Holistic Evaluation of Protein Foundation Models Fei Ye Zaixiang Zheng Dongyu Xue Yuning Shen Lihao Wang Yiming Ma Yan Wang X. Wang Xiangxin Zhou Quanquan Gu ELM 25 6 0 10 Sep 2024
Secondary Structure-Guided Novel Protein Sequence Generation with Latent Graph Diffusion Yutong Hu Y. Tan Andi Han Lirong Zheng Liang Hong Bingxin Zhou DiffM 15 1 0 10 Jul 2024
Full-Atom Peptide Design based on Multi-modal Flow Matching Jiahan Li Chaoran Cheng Zuofan Wu Ruihan Guo Shitong Luo Zhizhou Ren Jian-wei Peng Jianzhu Ma 32 14 0 02 Jun 2024
Sequence-Augmented SE(3)-Flow Matching For Conditional Protein Backbone Generation Guillaume Huguet James Vuckovic Kilian Fatras Eric Thibodeau-Laufer Pablo Lemos ... Jarrid Rector-Brooks Tara Akhound-Sadegh Michael M. Bronstein Alexander Tong A. Bose 32 26 0 30 May 2024
Trivialized Momentum Facilitates Diffusion Generative Modeling on Lie Groups Yuchen Zhu Tianrong Chen Lingkai Kong Evangelos A. Theodorou Molei Tao DiffM 35 3 0 25 May 2024
Out of Many, One: Designing and Scaffolding Proteins at the Scale of the Structural Universe with Genie 2 Yeqing Lin Minji Lee Zhao Zhang Mohammed AlQuraishi DiffM 27 17 0 24 May 2024
Extended Flow Matching: a Method of Conditional Generation with Generalized Continuity Equation Noboru Isobe Masanori Koyama Jinzhe Zhang Kohei Hayashi Kenji Fukumizu 25 10 0 29 Feb 2024
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