Towards Joint Sequence-Structure Generation of Nucleic Acid and Protein
Complexes with SE(3)-Discrete Diffusion

Towards Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion

21 December 2023

Jeffrey A. Ruffolo

Aadyot Bhatnagar

Papers citing "Towards Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion"

12 / 12 papers shown

Title
RiboGen: RNA Sequence and Structure Co-Generation with Equivariant MultiFlow Dana Rubin Allan dos Santos Costa Manvitha Ponnapati J. Jacobson 36 0 0 03 Mar 2025
Discrete Copula Diffusion Anji Liu Oliver Broadrick Mathias Niepert Guy Van den Broeck DiffM 56 4 0 02 Oct 2024
Discrete generative diffusion models without stochastic differential equations: a tensor network approach Luke Causer Grant M. Rotskoff J. P. Garrahan DiffM 32 2 0 15 Jul 2024
Evaluating representation learning on the protein structure universe Arian R. Jamasb Alex Morehead Chaitanya K. Joshi Zuobai Zhang Kieran Didi ... Charles Harris Jian Tang Jianlin Cheng Pietro Lio Tom L. Blundell SSL 31 12 0 19 Jun 2024
RNA-FrameFlow: Flow Matching for de novo 3D RNA Backbone Design Rishabh Anand Chaitanya K. Joshi Alex Morehead Arian R. Jamasb Charles Harris Simon V. Mathis Kieran Didi Bryan Hooi Pietro Liò Pietro Liò 45 2 0 19 Jun 2024
Sifting through the Noise: A Survey of Diffusion Probabilistic Models and Their Applications to Biomolecules Trevor Norton Debswapna Bhattacharya MedIm DiffM 35 2 0 31 May 2024
RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching Divya Nori Wengong Jin AI4CE 23 8 0 29 May 2024
Geometric Latent Diffusion Models for 3D Molecule Generation Minkai Xu Alexander Powers R. Dror Stefano Ermon J. Leskovec DiffM AI4CE 45 131 0 02 May 2023
Geometry-Complete Diffusion for 3D Molecule Generation and Optimization Alex Morehead Jianlin Cheng DiffM 14 21 0 08 Feb 2023
Diffusion-LM Improves Controllable Text Generation Xiang Lisa Li John Thickstun Ishaan Gulrajani Percy Liang Tatsunori B. Hashimoto AI4CE 171 768 0 27 May 2022
Protein Structure and Sequence Generation with Equivariant Denoising Diffusion Probabilistic Models N. Anand Tudor Achim DiffM 183 170 0 26 May 2022
Argmax Flows and Multinomial Diffusion: Learning Categorical Distributions Emiel Hoogeboom Didrik Nielsen P. Jaini Patrick Forré Max Welling DiffM 202 392 0 10 Feb 2021