Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows
with Applications to Protein Co-Design

Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design

7 February 2024

Andrew Campbell

Regina Barzilay

Papers citing "Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design"

16 / 16 papers shown

Title
DDPS: Discrete Diffusion Posterior Sampling for Paths in Layered Graphs Hao Luan See-Kiong Ng Chun Kai Ling 46 0 0 29 Apr 2025
FLOWR: Flow Matching for Structure-Aware De Novo, Interaction- and Fragment-Based Ligand Generation Julian Cremer Ross Irwin Alessandro Tibot J. Janet Simon Olsson Djork-Arné Clevert 19 0 0 14 Apr 2025
Preference-Based Alignment of Discrete Diffusion Models Umberto Borso Davide Paglieri Jude Wells Tim Rocktaschel 53 1 0 11 Mar 2025
RiboGen: RNA Sequence and Structure Co-Generation with Equivariant MultiFlow Dana Rubin Allan dos Santos Costa Manvitha Ponnapati J. Jacobson 29 0 0 03 Mar 2025
Theoretical Benefit and Limitation of Diffusion Language Model Guhao Feng Yihan Geng Jian-Yu Guan Wei Yu Wu Liwei Wang Di He DiffM 41 0 0 13 Feb 2025
Simplified and Generalized Masked Diffusion for Discrete Data Jiaxin Shi Kehang Han Z. Wang Arnaud Doucet Michalis K. Titsias DiffM 70 61 0 17 Jan 2025
Predicting sub-population specific viral evolution Wenxian Shi Menghua Wu Regina Barzilay 22 0 0 28 Oct 2024
Energy-Based Diffusion Language Models for Text Generation Minkai Xu Tomas Geffner Karsten Kreis Weili Nie Yilun Xu J. Leskovec Stefano Ermon Arash Vahdat DiffM 33 7 0 28 Oct 2024
Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design Chenyu Wang Masatoshi Uehara Yichun He Amy Wang Tommaso Biancalani Avantika Lal Tommi Jaakkola Sergey Levine Hanchen Wang Aviv Regev 38 8 0 17 Oct 2024
UniGEM: A Unified Approach to Generation and Property Prediction for Molecules Shikun Feng Yuyan Ni Yan Lu Zhi-Ming Ma Wei-Ying Ma Yanyan Lan 27 4 0 14 Oct 2024
Think While You Generate: Discrete Diffusion with Planned Denoising Sulin Liu Juno Nam Andrew Campbell Hannes Stärk Yilun Xu Tommi Jaakkola Rafael Gómez-Bombarelli DiffM 23 6 0 08 Oct 2024
Convergence of Score-Based Discrete Diffusion Models: A Discrete-Time Analysis Zikun Zhang Zixiang Chen Quanquan Gu DiffM 29 3 0 03 Oct 2024
Meta Flow Matching: Integrating Vector Fields on the Wasserstein Manifold Lazar Atanackovic Xi Zhang Brandon Amos Mathieu Blanchette Leo J. Lee Yoshua Bengio Alexander Tong Kirill Neklyudov 26 5 0 26 Aug 2024
Unlocking Guidance for Discrete State-Space Diffusion and Flow Models Hunter Nisonoff Junhao Xiong Stephan Allenspach Jennifer Listgarten 31 29 0 03 Jun 2024
Glauber Generative Model: Discrete Diffusion Models via Binary Classification Harshit Varma Dheeraj M. Nagaraj Karthikeyan Shanmugam VLM 50 2 0 27 May 2024
Categorical Flow Matching on Statistical Manifolds Chaoran Cheng Jiahan Li Jian-wei Peng Ge Liu 42 10 0 26 May 2024