Caduceus: Bi-Directional Equivariant Long-Range DNA Sequence Modeling

Caduceus: Bi-Directional Equivariant Long-Range DNA Sequence Modeling

5 March 2024

Chia-Hsiang Kao

Volodymyr Kuleshov

Papers citing "Caduceus: Bi-Directional Equivariant Long-Range DNA Sequence Modeling"

14 / 14 papers shown

Title
DNAZEN: Enhanced Gene Sequence Representations via Mixed Granularities of Coding Units Lei Mao Yuanhe Tian Yan Song 12 0 0 04 May 2025
Fast and Low-Cost Genomic Foundation Models via Outlier Removal Haozheng Luo Chenghao Qiu Maojiang Su Zhihan Zhou Zoe Mehta Guo Ye Jerry Yao-Chieh Hu Han Liu AAML 53 0 0 01 May 2025
Leveraging State Space Models in Long Range Genomics Matvei Popov Aymen Kallala Anirudha Ramesh Narimane Hennouni Shivesh Khaitan Rick Gentry Alain-Sam Cohen Mamba 60 0 0 07 Apr 2025
Revisiting Convolution Architecture in the Realm of DNA Foundation Models Yu Bo Weian Mao Yanjun Shao Weiqiang Bai Peng Ye Xinzhu Ma Junbo Zhao Hao Chen Chunhua Shen 3DV 55 1 0 25 Feb 2025
Life-Code: Central Dogma Modeling with Multi-Omics Sequence Unification Zicheng Liu Siyuan Li Zhiyuan Chen Lei Xin Fang Wu Chang Yu Qirong Yang Yucheng Guo Y. Yang Stan Z. Li SyDa AI4CE 87 0 0 11 Feb 2025
Specialized Foundation Models Struggle to Beat Supervised Baselines Zongzhe Xu Ritvik Gupta Wenduo Cheng Alexander Shen Junhong Shen Ameet Talwalkar M. Khodak AI4CE 38 4 0 05 Nov 2024
AI-driven View Guidance System in Intra-cardiac Echocardiography Imaging Jaeyoung Huh Paul Klein Gareth Funka-Lea Puneet Sharma A. Kapoor Young-Ho Kim 36 2 0 25 Sep 2024
Mambular: A Sequential Model for Tabular Deep Learning Anton Thielmann Manish Kumar Christoph Weisser Arik Reuter Benjamin Säfken Soheila Samiee Mamba LMTD 65 6 0 12 Aug 2024
Genomic Language Models: Opportunities and Challenges Gonzalo Benegas Chengzhong Ye C. Albors Jianan Canal Li Yun S. Song AI4CE LM&MA ELM 34 18 0 16 Jul 2024
SE(3)-Hyena Operator for Scalable Equivariant Learning Artem Moskalev Mangal Prakash Rui Liao Tommaso Mansi 27 2 0 01 Jul 2024
DeciMamba: Exploring the Length Extrapolation Potential of Mamba Assaf Ben-Kish Itamar Zimerman Shady Abu Hussein Nadav Cohen Amir Globerson Lior Wolf Raja Giryes Mamba 64 12 0 20 Jun 2024
TSCMamba: Mamba Meets Multi-View Learning for Time Series Classification Md. Atik Ahamed Qiang Cheng Mamba 53 1 0 06 Jun 2024
Understanding the differences in Foundation Models: Attention, State Space Models, and Recurrent Neural Networks Jerome Sieber Carmen Amo Alonso A. Didier M. Zeilinger Antonio Orvieto AAML 42 7 0 24 May 2024
Big Bird: Transformers for Longer Sequences Manzil Zaheer Guru Guruganesh Kumar Avinava Dubey Joshua Ainslie Chris Alberti ... Philip Pham Anirudh Ravula Qifan Wang Li Yang Amr Ahmed VLM 249 1,982 0 28 Jul 2020