v1v2 (latest)

Accurate Spatial Gene Expression Prediction by integrating Multi-resolution features

Computer Vision and Pattern Recognition (CVPR), 2024

12 March 2024

Papers citing "Accurate Spatial Gene Expression Prediction by integrating Multi-resolution features"

14 / 14 papers shown

Title
Auxiliary Gene Learning: Spatial Gene Expression Estimation by Auxiliary Gene Selection Kaito Shiku Kazuya Nishimura Shinnosuke Matsuo Yasuhiro Kojima Ryoma Bise 57 0 0 23 Nov 2025
Dual-Path Knowledge-Augmented Contrastive Alignment Network for Spatially Resolved Transcriptomics Wei Zhang Jiajun Chu Xinci Liu Chen Tong X. Li 30 0 0 21 Nov 2025
SIGMMA: Hierarchical Graph-Based Multi-Scale Multi-modal Contrastive Alignment of Histopathology Image and Spatial Transcriptome Dabin Jeong Amirhossein Vahidi Ciro Ramírez-Suástegui Marie Moullet Kevin Ly ... Daniyal Jafree Lloyd Steele Vijaya Baskar MS Muzlifah Haniffa Mohammad Lotfollahi 44 0 0 19 Nov 2025
SENCA-st: Integrating Spatial Transcriptomics and Histopathology with Cross Attention Shared Encoder for Region Identification in Cancer Pathology Shanaka Liyanaarachchi Chathurya Wijethunga Shihab Aaquil Ahamed Akthas Absar Ranga Rodrigo 118 0 0 11 Nov 2025
GenAR: Next-Scale Autoregressive Generation for Spatial Gene Expression Prediction Jiarui Ouyang Yihui Wang Yihang Gao Yingxue Xu Shu Yang Hao Chen 92 0 0 05 Oct 2025
Learning from Gene Names, Expression Values and Images: Contrastive Masked Text-Image Pretraining for Spatial Transcriptomics Representation Learning Jiahe Qian Yaoyu Fang Ziqiao Weng Xinkun Wang Lee A. Cooper Bo Zhou VLM 64 0 0 21 Sep 2025
Img2ST-Net: Efficient High-Resolution Spatial Omics Prediction from Whole Slide Histology Images via Fully Convolutional Image-to-Image Learning Junchao Zhu Ruining Deng Junlin Guo Tianyuan Yao Juming Xiong ... Shilin Zhao Haichun Yang Daguang Xu Yucheng Tang Yuankai Huo DiffM MedIm 78 2 0 20 Aug 2025
$$MV_{Hybrid}$: Improving Spatial Transcriptomics Prediction with Hybrid State Space-Vision Transformer Backbone in Pathology Vision Foundation Models$ $MV_{Hybrid}$ : Improving Spatial Transcriptomics Prediction with Hybrid State Space-Vision Transformer Backbone in Pathology Vision Foundation Models Won June Cho Hongjun Yoon Daeky Jeong Hyeongyeol Lim Yosep Chong 76 1 0 01 Aug 2025
Gene-DML: Dual-Pathway Multi-Level Discrimination for Gene Expression Prediction from Histopathology Images Yaxuan Song Jianan Fan Hang Chang Weidong (Tom) Cai AI4CE 104 0 0 19 Jul 2025
Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching Tinglin Huang Tianyu Liu Mehrtash Babadi Wengong Jin Rex Ying MedIm 100 4 0 25 May 2025
From Spots to Pixels: Dense Spatial Gene Expression Prediction from Histology Images Ruikun Zhang Yan Yang Liyuan Pan 232 1 0 03 Mar 2025
Diffusion Generative Modeling for Spatially Resolved Gene Expression Inference from Histology ImagesInternational Conference on Learning Representations (ICLR), 2025 Sichen Zhu Yuchen Zhu Molei Tao Peng-Chao Qiu MedIm 197 21 0 28 Jan 2025
ASIGN: An Anatomy-aware Spatial Imputation Graphic Network for 3D Spatial TranscriptomicsComputer Vision and Pattern Recognition (CVPR), 2024 Junchao Zhu Ruining Deng Tianyuan Yao Juming Xiong Chongyu Qu ... Mengmeng Yin Yu Wang Shilin Zhao Haichun Yang Yuankai Huo 180 13 0 04 Dec 2024
RankByGene: Gene-Guided Histopathology Representation Learning Through Cross-Modal Ranking Consistency Wentao Huang Meilong Xu Xiaoling Hu Shahira Abousamra Aniruddha Ganguly ... Prateek Prasanna Tahsin M. Kurc Joel H. Saltz Michael L. Miller Chong Chen 342 1 0 22 Nov 2024

Title

Auxiliary Gene Learning: Spatial Gene Expression Estimation by Auxiliary Gene Selection

23 Nov 2025

Dual-Path Knowledge-Augmented Contrastive Alignment Network for Spatially Resolved Transcriptomics

21 Nov 2025

SIGMMA: Hierarchical Graph-Based Multi-Scale Multi-modal Contrastive Alignment of Histopathology Image and Spatial Transcriptome

Dabin Jeong

Amirhossein Vahidi

Ciro Ramírez-Suástegui

...

19 Nov 2025

SENCA-st: Integrating Spatial Transcriptomics and Histopathology with Cross Attention Shared Encoder for Region Identification in Cancer Pathology

Shanaka Liyanaarachchi

118

11 Nov 2025

GenAR: Next-Scale Autoregressive Generation for Spatial Gene Expression Prediction

05 Oct 2025

Learning from Gene Names, Expression Values and Images: Contrastive Masked Text-Image Pretraining for Spatial Transcriptomics Representation Learning

21 Sep 2025

Img2ST-Net: Efficient High-Resolution Spatial Omics Prediction from Whole Slide Histology Images via Fully Convolutional Image-to-Image Learning

...

20 Aug 2025

$$MV_{Hybrid}$: Improving Spatial Transcriptomics Prediction with Hybrid State Space-Vision Transformer Backbone in Pathology Vision Foundation Models$