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Learning the Language of Protein Structure

Learning the Language of Protein Structure

8 January 2025
Benoit Gaujac
Jérémie Donà
Liviu Copoiu
Timothy Atkinson
Thomas Pierrot
Thomas D. Barrett
ArXiv (abs)PDFHTML

Papers citing "Learning the Language of Protein Structure"

4 / 4 papers shown
Title
Flow Autoencoders are Effective Protein Tokenizers
Flow Autoencoders are Effective Protein Tokenizers
Rohit Dilip
Evan Zhang
Ayush Varshney
David Van Valen
DiffM
80
0
0
30 Sep 2025
Prot2Token: A Unified Framework for Protein Modeling via Next-Token Prediction
Prot2Token: A Unified Framework for Protein Modeling via Next-Token Prediction
Mahdi Pourmirzaei
Farzaneh Esmaili
Salhuldin Alqarghuli
Mohammadreza Pourmirzaei
Ye Han
Kai Chen
Mohsen Rezaei
Duolin Wang
Dong Xu
226
2
0
26 May 2025
Protein Structure Tokenization: Benchmarking and New Recipe
Protein Structure Tokenization: Benchmarking and New Recipe
Xinyu Yuan
Zichen Wang
Marcus Collins
Huzefa Rangwala
200
4
0
28 Feb 2025
Bio2Token: All-atom tokenization of any biomolecular structure with Mamba
Bio2Token: All-atom tokenization of any biomolecular structure with Mamba
Andrew Liu
Axel Elaldi
Nathan Russell
Olivia Viessmann
Mamba
303
5
0
24 Oct 2024
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