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Many-Shot In-Context Learning for Molecular Inverse Design

26 July 2024
Saeed Moayedpour
Alejandro Corrochano-Navarro
F. Sahneh
Shahriar Noroozizadeh
Alexander Koetter
Jiri Vymetal
Lorenzo Kogler-Anele
Pablo Mas
Yasser Jangjou
Sizhen Li
Michael Bailey
M. Bianciotto
Hans Matter
Christoph Grebner
Gerhard Hessler
Ziv Bar-Joseph
Sven Jager
    BDL
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Abstract

Large Language Models (LLMs) have demonstrated great performance in few-shot In-Context Learning (ICL) for a variety of generative and discriminative chemical design tasks. The newly expanded context windows of LLMs can further improve ICL capabilities for molecular inverse design and lead optimization. To take full advantage of these capabilities we developed a new semi-supervised learning method that overcomes the lack of experimental data available for many-shot ICL. Our approach involves iterative inclusion of LLM generated molecules with high predicted performance, along with experimental data. We further integrated our method in a multi-modal LLM which allows for the interactive modification of generated molecular structures using text instructions. As we show, the new method greatly improves upon existing ICL methods for molecular design while being accessible and easy to use for scientists.

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