Geometry Informed Tokenization of Molecules for Language Model
Generation

Geometry Informed Tokenization of Molecules for Language Model Generation

19 August 2024

Xiner Li

Carl N. Edwards

Yuchao Lin

Heng Ji

Papers citing "Geometry Informed Tokenization of Molecules for Language Model Generation"

5 / 5 papers shown

Title
Bio2Token: All-atom tokenization of any biomolecular structure with Mamba Andrew Liu Axel Elaldi Nathan Russell Olivia Viessmann Mamba 61 2 0 24 Oct 2024
Eliminating Position Bias of Language Models: A Mechanistic Approach Ziqi Wang Hanlin Zhang Xiner Li Kuan-Hao Huang Chi Han Shuiwang Ji Sham Kakade Hao Peng Heng Ji 49 12 0 01 Jul 2024
A Systematic Survey of Chemical Pre-trained Models Jun-Xiong Xia Yanqiao Zhu Yuanqi Du Stan Z.Li AI4CE 46 50 0 29 Oct 2022
Equivariant Energy-Guided SDE for Inverse Molecular Design Fan Bao Min Zhao Zhongkai Hao Pei‐Yun Li Chongxuan Li Jun Zhu DiffM 162 62 0 30 Sep 2022
Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic Graphs Yi-Lun Liao Tess E. Smidt 73 142 0 23 Jun 2022