v1v2 (latest)

NegBio: a high-performance tool for negation and uncertainty detection in radiology reports

16 December 2017

Xiaosong Wang

Papers citing "NegBio: a high-performance tool for negation and uncertainty detection in radiology reports"

42 / 92 papers shown

Title
RapidRead: Global Deployment of State-of-the-art Radiology AI for a Large Veterinary Teleradiology Practice Michael Fitzke Conrad Stack Andre Dourson Rodrigo M. B. Santana Diane U Wilson L. Ziemer Arjun Soin M. Lungren Paul Fisher Mark Parkinson LM&MA MedIm 43 7 0 09 Nov 2021
Modality and Negation in Event Extraction Sander Bijl de Vroe Liane Guillou Miloš Stanojević Nick McKenna Mark Steedman 62 11 0 20 Sep 2021
Scope resolution of predicted negation cues: A two-step neural network-based approach D. D. Jong 54 0 0 15 Sep 2021
Self-Supervised Detection of Contextual Synonyms in a Multi-Class Setting: Phenotype Annotation Use Case Jingqing Zhang Luis Bolaños T. Li Ashwani Tanwar Guilherme Freire Xian Yang Julia Ive Vibhor Gupta Yike Guo 31 14 0 04 Sep 2021
A Flexible Three-Dimensional Hetero-phase Computed Tomography Hepatocellular Carcinoma (HCC) Detection Algorithm for Generalizable and Practical HCC Screening Chi-Tung Cheng Jinzheng Cai Wei Teng Youjing Zheng Yuting Huang ... Ta-Sen Yeh Jing Xiao Le Lu Chien-Hung Liao Adam P. Harrison 22 1 0 17 Aug 2021
BERTHop: An Effective Vision-and-Language Model for Chest X-ray Disease Diagnosis Masoud Monajatipoor Mozhdeh Rouhsedaghat Liunian Harold Li Aichi Chien C.-C. Jay Kuo Fabien Scalzo Kai-Wei Chang LM&MA MedIm 60 31 0 10 Aug 2021
RATCHET: Medical Transformer for Chest X-ray Diagnosis and Reporting Benjamin Hou Georgios Kaissis Ronald M. Summers Bernhard Kainz ViT LM&MA MedIm 83 51 0 05 Jul 2021
RadGraph: Extracting Clinical Entities and Relations from Radiology Reports Saahil Jain Ashwin Agrawal A. Saporta Steven QH Truong D. Duong ... Yuhao Zhang M. Lungren A. Ng C. Langlotz Pranav Rajpurkar MedIm 104 214 0 28 Jun 2021
A Case Study on Pros and Cons of Regular Expression Detection and Dependency Parsing for Negation Extraction from German Medical Documents. Technical Report H. Profitlich Daniel Sonntag MedIm 24 3 0 20 May 2021
Leveraging Deep Representations of Radiology Reports in Survival Analysis for Predicting Heart Failure Patient Mortality Hyungchul Lee E. Sholle Ashley N. Beecy S. Al’Aref Yifan Peng 98 8 0 03 May 2021
VisualCheXbert: Addressing the Discrepancy Between Radiology Report Labels and Image Labels Saahil Jain Akshay Smit Steven QH Truong C. Nguyen Minh-Thanh Huynh Mudit Jain Victoria A Young A. Ng M. Lungren Pranav Rajpurkar MedIm 64 31 0 23 Feb 2021
Progressive Transformer-Based Generation of Radiology Reports Farhad Nooralahzadeh Nicolas Andres Perez Gonzalez T. Frauenfelder Koji Fujimoto Michael Krauthammer ViT MedIm 108 89 0 19 Feb 2021
Computer-aided abnormality detection in chest radiographs in a clinical setting via domain-adaptation A. Dubey M. T. Young Christopher Stanley D. Lunga Jacob D. Hinkle OOD 67 5 0 19 Dec 2020
Using Radiomics as Prior Knowledge for Thorax Disease Classification and Localization in Chest X-rays Yan Han Chongyan Chen Liyan Tang Mingquan Lin Ajay Jaiswal Song Wang Ahmed H. Tewfik George Shih Ying Ding Yifan Peng LM&MA 108 10 0 25 Nov 2020
On the diminishing return of labeling clinical reports Jean-Baptiste Lamare Tobi Olatunji Linxing Yao 28 2 0 27 Oct 2020
A Survey on Deep Learning and Explainability for Automatic Report Generation from Medical Images Pablo Messina Pablo Pino Denis Parra Alvaro Soto Cecilia Besa S. Uribe Marcelo andía C. Tejos Claudia Prieto Daniel Capurro MedIm 125 64 0 20 Oct 2020
Improving Factual Completeness and Consistency of Image-to-Text Radiology Report Generation Yasuhide Miura Yuhao Zhang Emily Bao Tsai C. Langlotz Dan Jurafsky MedIm 245 159 0 20 Oct 2020
Contrastive Cross-Modal Pre-Training: A General Strategy for Small Sample Medical Imaging G. Liang Connor Greenwell Yu Zhang Xiaoqin Wang Ramakanth Kavuluru Nathan Jacobs 84 22 0 06 Oct 2020
Deep Hiearchical Multi-Label Classification Applied to Chest X-Ray Abnormality Taxonomies Haomin Chen S. Miao Daguang Xu Gregory Hager Adam P. Harrison 67 29 0 11 Sep 2020
A Comparison of Pre-trained Vision-and-Language Models for Multimodal Representation Learning across Medical Images and Reports Yikuan Li Hanyin Wang Yuan Luo 70 66 0 03 Sep 2020
Ontology-driven weak supervision for clinical entity classification in electronic health records Jason Alan Fries E. Steinberg S. Khattar Scott L. Fleming J. Posada A. Callahan N. Shah 86 73 0 05 Aug 2020
CheXpert++: Approximating the CheXpert labeler for Speed,Differentiability, and Probabilistic Output Matthew B. A. McDermott T. Hsu W. Weng Marzyeh Ghassemi U. Toronto 91 32 0 26 Jun 2020
COVID-19-CT-CXR: a freely accessible and weakly labeled chest X-ray and CT image collection on COVID-19 from biomedical literature Yifan Peng Yuxing Tang Sungwon Lee Yingying Zhu Ronald M. Summers Zhiyong Lu OOD 65 17 0 11 Jun 2020
Assertion Detection in Multi-Label Clinical Text using Scope Localization Rajeev Bhatt Ambati Ahmed Ada Hanifi Ramya Vunikili Puneet Sharma Oladimeji Farri 14 1 0 19 May 2020
CheXbert: Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT Akshay Smit Saahil Jain Pranav Rajpurkar Anuj Pareek A. Ng M. Lungren MedIm 89 333 0 20 Apr 2020
Query-Focused EHR Summarization to Aid Imaging Diagnosis Denis Jered McInerney B. Dabiri Anne-Sophie Touret Geoffrey S. Young Jan-Willem van de Meent Byron C. Wallace 41 12 0 09 Apr 2020
When Radiology Report Generation Meets Knowledge Graph Yixiao Zhang Xiaosong Wang Ziyue Xu Qihang Yu Alan Yuille Daguang Xu MedIm 90 304 0 19 Feb 2020
Machine-Learning-Based Multiple Abnormality Prediction with Large-Scale Chest Computed Tomography Volumes R. Draelos D. Dov Maciej A. Mazurowski J. Lo Ricardo Henao Geoffrey D. Rubin Lawrence Carin 93 71 0 12 Feb 2020
NegBERT: A Transfer Learning Approach for Negation Detection and Scope Resolution Aditya P. Khandelwal S. Sawant 86 86 0 11 Nov 2019
Learning to estimate label uncertainty for automatic radiology report parsing Tobi Olatunji Linxing Yao UQCV MedIm 16 2 0 01 Oct 2019
CT Data Curation for Liver Patients: Phase Recognition in Dynamic Contrast-Enhanced CT Bo Zhou Adam P. Harrison Jiawen Yao Chi-Tung Cheng Jing Xiao Chien-Hung Liao Le Lu 54 11 0 05 Sep 2019
Understanding Spatial Language in Radiology: Representation Framework, Annotation, and Spatial Relation Extraction from Chest X-ray Reports using Deep Learning Surabhi Datta Yuqi Si Laritza M. Rodriguez S. E. Shooshan Dina Demner-Fushman Kirk Roberts MedIm 64 35 0 13 Aug 2019
Classifying the reported ability in clinical mobility descriptions Denis R. Newman-Griffis Ayah Zirikly Guy Divita Bart Desmet 35 10 0 07 Jun 2019
Caveats in Generating Medical Imaging Labels from Radiology Reports Tobi Olatunji L. Yao Ben Covington Alexander Rhodes Anthony Upton MedIm 45 18 0 06 May 2019
Clinically Accurate Chest X-Ray Report Generation Guanxiong Liu T. Hsu Matthew B. A. McDermott Willie Boag W. Weng Peter Szolovits Marzyeh Ghassemi MedIm 121 278 0 04 Apr 2019
Cross-Modal Data Programming Enables Rapid Medical Machine Learning Jared A. Dunnmon Alexander Ratner Nishith Khandwala Khaled Kamal Saab Matthew Markert ... R. Goldman Christopher Lee-Messer M. Lungren D. Rubin Christopher Ré MedIm 84 73 0 26 Mar 2019
PadChest: A large chest x-ray image dataset with multi-label annotated reports A. Bustos A. Pertusa J. M. Salinas M. Iglesia-Vayá LM&MA 95 622 0 22 Jan 2019
MIMIC-CXR-JPG, a large publicly available database of labeled chest radiographs Alistair E. W. Johnson Tom Pollard Nathaniel R. Greenbaum M. Lungren Chih-ying Deng Yifan Peng Zhiyong Lu R. Mark Seth Berkowitz Steven Horng MedIm 125 822 0 21 Jan 2019
CheXpert: A Large Chest Radiograph Dataset with Uncertainty Labels and Expert Comparison Jeremy Irvin Pranav Rajpurkar M. Ko Yifan Yu Silviana Ciurea-Ilcus ... D. Larson C. Langlotz Bhavik Patel M. Lungren A. Ng 221 2,613 0 21 Jan 2019
Joint Entity Extraction and Assertion Detection for Clinical Text Parminder Bhatia B. Celikkaya Mohammed Khalilia MedIm 75 32 0 13 Dec 2018
Efficient and Accurate Abnormality Mining from Radiology Reports with Customized False Positive Reduction Nithya Attaluri Ahmed Nasir C. Powe Harold Racz Ben Covington L. Yao Jordan Prosky Eric Poblenz Tobi Olatunji Kevin Lyman MedIm 16 2 0 01 Oct 2018
Large Scale Automated Reading of Frontal and Lateral Chest X-Rays using Dual Convolutional Neural Networks Jonathan Rubin Deepan Sanghavi Claire Zhao Kathy Lee Ashequl Qadir M. Xu-Wilson MedIm 60 84 0 20 Apr 2018