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1804.10850
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Drug Similarity Integration Through Attentive Multi-view Graph Auto-Encoders
28 April 2018
Tengfei Ma
Cao Xiao
Jiayu Zhou
Fei Wang
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Papers citing
"Drug Similarity Integration Through Attentive Multi-view Graph Auto-Encoders"
33 / 33 papers shown
Contrastive Multi-View Graph Hashing
Yang Xu
Zuliang Yang
Kai Ming Ting
155
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0
17 Aug 2025
Disentangled Graph Representation Based on Substructure-Aware Graph Optimal Matching Kernel Convolutional Networks
Mao Wang
Tao Wu
Xingping Xian
Shaojie Qiao
Weina Niu
Canyixing Cui
394
0
0
23 Apr 2025
Recent Advances in Hypergraph Neural Networks
Murong Yang
Xin-Jian Xu
GNN
269
8
0
11 Mar 2025
Masked AutoEncoder for Graph Clustering without Pre-defined Cluster Number k
Yuanchi Ma
Hui He
Zhongxiang Lei
ZhenDong Niu
204
2
0
09 Jan 2024
Neural Embeddings for Protein Graphs
Francesco Ceccarelli
Lorenzo Giusti
S. Holden
Pietro Lio
117
1
0
07 Jun 2023
GraphGANFed: A Federated Generative Framework for Graph-Structured Molecules Towards Efficient Drug Discovery
IEEE/ACM Transactions on Computational Biology & Bioinformatics (TCBB), 2023
Daniel Manu
Jingjing Yao
Wuji Liu
Xiang Sun
FedML
171
17
0
11 Apr 2023
Knowledge-augmented Graph Machine Learning for Drug Discovery: A Survey from Precision to Interpretability
ACM Computing Surveys (ACM Comput. Surv.), 2023
Zhiqiang Zhong
A. Barkova
Davide Mottin
205
13
0
16 Feb 2023
Molecular Substructure-Aware Network for Drug-Drug Interaction Prediction
International Conference on Information and Knowledge Management (CIKM), 2022
Xinyu Zhu
Yongliang Shen
Weiming Lu
111
24
0
24 Aug 2022
DDI Prediction via Heterogeneous Graph Attention Networks
Farhan Tanvir
Khaled Mohammed Saifuddin
Esra Akbas
190
1
0
12 Jul 2022
Graph-based Molecular Representation Learning
International Joint Conference on Artificial Intelligence (IJCAI), 2022
Zhichun Guo
Kehan Guo
B. Nan
Yijun Tian
Roshni G. Iyer
...
Olaf Wiest
Xiangliang Zhang
Wei Wang
Chuxu Zhang
Nitesh Chawla
AI4CE
395
88
0
08 Jul 2022
Projective Ranking-based GNN Evasion Attacks
IEEE Transactions on Knowledge and Data Engineering (TKDE), 2022
He Zhang
Lizhen Qu
Chuan Zhou
Shirui Pan
AAML
280
30
0
25 Feb 2022
Multi-task Joint Strategies of Self-supervised Representation Learning on Biomedical Networks for Drug Discovery
Nature Machine Intelligence (Nat. Mach. Intell.), 2022
Xiaoqi Wang
Yingjie Cheng
Yaning Yang
Yue Yu
Fei Li
Shaoliang Peng
171
59
0
12 Jan 2022
A Unified View of Relational Deep Learning for Drug Pair Scoring
International Joint Conference on Artificial Intelligence (IJCAI), 2021
Benedek Rozemberczki
Stephen Bonner
A. Nikolov
M. Ughetto
Sebastian Nilsson
Eliseo Papa
307
17
0
04 Nov 2021
Relation Matters in Sampling: A Scalable Multi-Relational Graph Neural Network for Drug-Drug Interaction Prediction
A. Feeney
Rishabh Gupta
Veronika Thost
Rico Angell
Gayathri Chandu
Yash Adhikari
Tengfei Ma
113
12
0
28 May 2021
Reinforced Neighborhood Selection Guided Multi-Relational Graph Neural Networks
Hao Peng
Ruitong Zhang
Yingtong Dou
Renyu Yang
Jingyi Zhang
Philip S. Yu
490
137
0
16 Apr 2021
SUGAR: Subgraph Neural Network with Reinforcement Pooling and Self-Supervised Mutual Information Mechanism
The Web Conference (WWW), 2021
Qingyun Sun
Jianxin Li
Hao Peng
Hongzhi Zhang
Yuanxing Ning
Phillip S. Yu
Lifang He
348
189
0
20 Jan 2021
Bi-Level Graph Neural Networks for Drug-Drug Interaction Prediction
Yunsheng Bai
Ken Gu
Luke Huan
Wei Wang
GNN
106
23
0
11 Jun 2020
SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks
Scientific Reports (Sci Rep), 2020
Kexin Huang
C. Xiao
Lucas Glass
Marinka Zitnik
Jimeng Sun
GNN
182
136
0
30 Apr 2020
Drug-Drug Interaction Prediction with Wasserstein Adversarial Autoencoder-based Knowledge Graph Embeddings
Yuanfei Dai
Chenhao Guo
Wenzhong Guo
Carsten Eickhoff
BDL
105
2
0
15 Apr 2020
DeepGS: Deep Representation Learning of Graphs and Sequences for Drug-Target Binding Affinity Prediction
European Conference on Artificial Intelligence (ECAI), 2020
Xuan Lin
143
67
0
31 Mar 2020
Adversarial Attacks and Defenses on Graphs: A Review, A Tool and Empirical Studies
Wei Jin
Yaxin Li
Han Xu
Yiqi Wang
Shuiwang Ji
Charu C. Aggarwal
Shucheng Zhou
AAML
GNN
315
107
0
02 Mar 2020
Tri-graph Information Propagation for Polypharmacy Side Effect Prediction
Hao Xu
Shengqi Sang
Haiping Lu
99
14
0
28 Jan 2020
Artificial Intelligence for Social Good: A Survey
Zheyuan Ryan Shi
Claire Wang
Fei Fang
AI4TS
313
96
0
07 Jan 2020
Med2Meta: Learning Representations of Medical Concepts with Meta-Embeddings
International Conference on Health Informatics (ICHI), 2019
Shaika Chowdhury
Chenwei Zhang
Philip S. Yu
Yuan Luo
139
7
0
06 Dec 2019
CASTER: Predicting Drug Interactions with Chemical Substructure Representation
AAAI Conference on Artificial Intelligence (AAAI), 2019
Kexin Huang
Cao Xiao
T. Hoang
Lucas Glass
Jimeng Sun
181
145
0
15 Nov 2019
GENN: Predicting Correlated Drug-drug Interactions with Graph Energy Neural Networks
Tengfei Ma
Junyuan Shang
Cao Xiao
Jimeng Sun
GNN
157
15
0
04 Oct 2019
Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations
Xiang Yue
Zhen Wang
Jingong Huang
Srinivasan Parthasarathy
Soheil Moosavinasab
Yungui Huang
S. Lin
Wen Zhang
Ping Zhang
Huan Sun
GNN
188
352
0
12 Jun 2019
Unsupervised Inductive Graph-Level Representation Learning via Graph-Graph Proximity
Yunsheng Bai
Haoyang Ding
Yang Qiao
Agustin Marinovic
Ken Gu
Tingting Chen
Luke Huan
Wei Wang
324
10
0
01 Apr 2019
InceptionGCN: Receptive Field Aware Graph Convolutional Network for Disease Prediction
Anees Kazi
Shayan Shekarforoush
S. Krishna
Hendrik Burwinkel
G. Vivar
K. Kortüm
Seyed-Ahmad Ahmadi
Shadi Albarqouni
Nassir Navab
GNN
MedIm
156
161
0
11 Mar 2019
GAMENet: Graph Augmented MEmory Networks for Recommending Medication Combination
Junyuan Shang
Cao Xiao
Tengfei Ma
Hongyan Li
Jimeng Sun
GNN
405
301
0
06 Sep 2018
SimGNN: A Neural Network Approach to Fast Graph Similarity Computation
Yunsheng Bai
Haoyang Ding
Song Bian
Ting-Li Chen
Luke Huan
Wei Wang
GNN
273
379
0
16 Aug 2018
Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities
Information Fusion (Inf. Fusion), 2018
Marinka Zitnik
Francis Nguyen
Bo Wang
J. Leskovec
Anna Goldenberg
Michael M. Hoffman
LM&MA
AI4CE
216
520
0
30 Jun 2018
Multi-View Graph Convolutional Network and Its Applications on Neuroimage Analysis for Parkinson's Disease
Xi Sheryl Zhang
Lifang He
Kun Chen
Yuan Luo
Jiayu Zhou
Fei Wang
170
102
0
22 May 2018
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