DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences

6 November 2018

Papers citing "DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences"

35 / 35 papers shown

Title
PyTDC: A multimodal machine learning training, evaluation, and inference platform for biomedical foundation models Alejandro Velez-Arce Marinka Zitnik 24 0 0 08 May 2025
EquiCPI: SE(3)-Equivariant Geometric Deep Learning for Structure-Aware Prediction of Compound-Protein Interactions Ngoc-Quang Nguyen 30 0 0 07 Apr 2025
SCOPE-DTI: Semi-Inductive Dataset Construction and Framework Optimization for Practical Usability Enhancement in Deep Learning-Based Drug Target Interaction Prediction Y. Chen Xiang Ji Ziyue Zhang Yuming Zhou Yang-Chi-Dung Lin ... Yixian Huang Shidong Cui Shih-Chung Yen Ariel Warshel Hsien-Da Huang 57 0 0 12 Mar 2025
Leveraging Large Language Models to Predict Antibody Biological Activity Against Influenza A Hemagglutinin Ella Barkan Ibrahim Siddiqui Kevin J. Cheng Alex Golts Yoel Shoshan J. Weber Yailin Campos Mota Michal Ozery-Flato Giuseppe A. Sautto AI4CE 56 0 0 02 Feb 2025
FlexMol: A Flexible Toolkit for Benchmarking Molecular Relational Learning Sizhe Liu Jun-Xiong Xia Lecheng Zhang Yuchen Liu Yue Liu ... Zhangyang Gao Bozhen Hu Cheng Tan Hongxin Xiang Stan Z. Li 24 2 0 19 Oct 2024
Accurate Prediction of Ligand-Protein Interaction Affinities with Fine-Tuned Small Language Models Ben Fauber LM&MA 40 1 0 27 Jun 2024
FusionDTI: Fine-grained Binding Discovery with Token-level Fusion for Drug-Target Interaction Zhaohan Meng Zaiqiao Meng I. Ounis 49 4 0 03 Jun 2024
A Cross-Field Fusion Strategy for Drug-Target Interaction Prediction Hongzhi Zhang Xiuwen Gong Shirui Pan Jia Wu Bo Du Wenbin Hu 24 3 0 23 May 2024
HiGraphDTI: Hierarchical Graph Representation Learning for Drug-Target Interaction Prediction Bin Liu Siqi Wu Jin Wang Xin Deng Ao Zhou 19 0 0 16 Apr 2024
BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task Tuning Qizhi Pei Lijun Wu Kaiyuan Gao Xiaozhuan Liang Yin Fang Jinhua Zhu Shufang Xie Tao Qin Rui Yan AI4CE 51 30 0 27 Feb 2024
PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction Lirong Wu Yufei Huang Cheng Tan Zhangyang Gao Bozhen Hu Haitao Lin Zicheng Liu Stan Z. Li 11 11 0 13 Feb 2024
FragXsiteDTI: Revealing Responsible Segments in Drug-Target Interaction with Transformer-Driven Interpretation Ali Khodabandeh Yalabadi Mehdi Yazdani-Jahromi Niloofar Yousefi Aida Tayebi Sina Abdidizaji O. Garibay 10 2 0 04 Nov 2023
BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations Qizhi Pei Wei Zhang Jinhua Zhu Kehan Wu Kaiyuan Gao Lijun Wu Yingce Xia Rui Yan 30 60 0 11 Oct 2023
Ophiuchus: Scalable Modeling of Protein Structures through Hierarchical Coarse-graining SO(3)-Equivariant Autoencoders Allan dos Santos Costa Ilan Mitnikov Mario Geiger Manvitha Ponnapati Tess E. Smidt Joseph Jacobson DiffM 18 3 0 04 Oct 2023
PIGNet2: A Versatile Deep Learning-based Protein-Ligand Interaction Prediction Model for Binding Affinity Scoring and Virtual Screening Seokhyun Moon Sang-Yeon Hwang Jaechang Lim Woo Youn Kim 11 12 0 03 Jul 2023
MCPI: Integrating Multimodal Data for Enhanced Prediction of Compound Protein Interactions Li Zhang Wenhao Li Hao Guan Zhiquan He Min-Cai Cheng Han Wang 22 0 0 15 Jun 2023
Large AI Models in Health Informatics: Applications, Challenges, and the Future Jianing Qiu Lin Li Jiankai Sun Jiachuan Peng Peilun Shi ... Bo Xiao Wu Yuan Ningli Wang Dong Xu Benny P. L. Lo AI4MH LM&MA 40 127 0 21 Mar 2023
Structure-based drug discovery with deep learning Rıza Özçelik D. V. Tilborg José Jiménez-Luna F. Grisoni AI4CE 19 35 0 26 Dec 2022
Predicting Protein-Ligand Binding Affinity via Joint Global-Local Interaction Modeling Yang Zhang G. Zhou Zhewei Wei Hongteng Xu 27 9 0 18 Sep 2022
Interpretable bilinear attention network with domain adaptation improves drug-target prediction Peizhen Bai Filip Miljković Bino John Haiping Lu OOD 11 150 0 03 Aug 2022
Associative Learning Mechanism for Drug-Target Interaction Prediction Zhiqin Zhu Zheng Yao Guanqiu Qi Neal Mazur Baisheng Cong OOD 14 30 0 24 May 2022
Enhanced compound-protein binding affinity prediction by representing protein multimodal information via a coevolutionary strategy Binjie Guo Hanyu Zheng Haohan Jiang Xiaodan Li Nai-Yang Guan Yanming Zuo Yicheng Zhang Hengfu Yang Xuhua Wang 14 4 0 30 Mar 2022
A Supervised Machine Learning Approach for Sequence Based Protein-protein Interaction (PPI) Prediction Soumyadeep Debnath A. F. Mollah 11 5 0 23 Mar 2022
Hierarchical Graph Representation Learning for the Prediction of Drug-Target Binding Affinity Zhaoyang Chu Shichao Liu Wen Zhang 25 40 0 22 Mar 2022
Deep learning for drug repurposing: methods, databases, and applications Xiao Pan Xuan Lin Dongsheng Cao Xiangxiang Zeng Philip S. Yu Lifang He R. Nussinov F. Cheng 25 124 0 08 Feb 2022
CSI: Contrastive Data Stratification for Interaction Prediction and its Application to Compound-Protein Interaction Prediction A. Kalia Dilip Krishnan Soha Hassoun Tufts University 13 2 0 18 Nov 2021
Drug-Target Interaction Prediction with Graph Attention networks Haiyang Wang Guangyu Zhou Siqi Liu Jyun-Yu Jiang Wei Wang GNN 14 22 0 10 Jul 2021
ParaVS: A Simple, Fast, Efficient and Flexible Graph Neural Network Framework for Structure-Based Virtual Screening Junfeng Wu Dawei Leng Lurong Pan 11 0 0 08 Feb 2021
BridgeDPI: A Novel Graph Neural Network for Predicting Drug-Protein Interactions Yifan Wu Min Gao Min Zeng Feiyang Chen Min Li Jie Zhang 22 32 0 29 Jan 2021
Bayesian neural network with pretrained protein embedding enhances prediction accuracy of drug-protein interaction QHwan Kim Joon-Hyuk Ko Sunghoon Kim Nojun Park W. Jhe BDL 32 27 0 15 Dec 2020
Multi-View Self-Attention for Interpretable Drug-Target Interaction Prediction Brighter Agyemang Wei-Ping Wu Michael Y. Kpiebaareh Zhihua Lei Ebenezer Nanor Lei Chen 20 28 0 01 May 2020
MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction Kexin Huang Cao Xiao Lucas Glass Jimeng Sun 9 299 0 23 Apr 2020
DeepPurpose: a Deep Learning Library for Drug-Target Interaction Prediction Kexin Huang Tianfan Fu Lucas Glass Marinka Zitnik Cao Xiao Jimeng Sun VLM 16 17 0 19 Apr 2020
Explainable Deep Relational Networks for Predicting Compound-Protein Affinities and Contacts Mostafa Karimi Di Wu Zhangyang Wang Yang Shen 27 46 0 29 Dec 2019
Drug-Target Indication Prediction by Integrating End-to-End Learning and Fingerprints Brighter Agyemang Wei-Ping Wu Michael Y. Kpiebaareh Ebenezer Nanor 19 2 0 03 Dec 2019