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1908.01288
Cited By
Drug-Drug Interaction Prediction Based on Knowledge Graph Embeddings and Convolutional-LSTM Network
ACM International Conference on Bioinformatics, Computational Biology and Biomedicine (ACM-BCB), 2019
4 August 2019
Md. Rezaul Karim
Michael Cochez
J. Jares
Mamtaz Uddin
Oya Beyan
Stefan Decker
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Papers citing
"Drug-Drug Interaction Prediction Based on Knowledge Graph Embeddings and Convolutional-LSTM Network"
33 / 33 papers shown
MolBridge: Atom-Level Joint Graph Refinement for Robust Drug-Drug Interaction Event Prediction
Xuan Lin
Aocheng Ding
Tengfei Ma
Hua Liang
Zhe Quan
192
0
0
23 Oct 2025
A Hybrid Computational Intelligence Framework with Metaheuristic Optimization for Drug-Drug Interaction Prediction
Maryam Abdollahi Shamami
Babak Teimourpour
Farshad Sharifi
137
0
0
08 Oct 2025
Benchmarking drug-drug interaction prediction methods: a perspective of distribution changes
Bioinformatics (Bioinformatics), 2024
Zhenqian Shen
Mingyuan Zhou
Yongqi Zhang
Quanming Yao
240
0
0
24 Oct 2024
Devil in the Tail: A Multi-Modal Framework for Drug-Drug Interaction Prediction in Long Tail Distinction
International Conference on Information and Knowledge Management (CIKM), 2024
Liangwei Nathan Zheng
Chang George Dong
Wei Emma Zhang
Xin Chen
Lin Yue
Weitong Chen
190
2
0
16 Oct 2024
RGDA-DDI: Residual graph attention network and dual-attention based framework for drug-drug interaction prediction
Changjian Zhou
Xin Zhang
Jiafeng Li
Jia Song
Wensheng Xiang
139
2
0
27 Aug 2024
Knowledge-Aware Parsimony Learning: A Perspective from Relational Graphs
Quanming Yao
Yongqi Zhang
Yaqing Wang
Nan Yin
James Kwok
Qiang Yang
282
0
0
29 Jun 2024
Learning to Describe for Predicting Zero-shot Drug-Drug Interactions
Conference on Empirical Methods in Natural Language Processing (EMNLP), 2024
Fangqi Zhu
Yongqi Zhang
Lei Chen
Bing Qin
Ruifeng Xu
221
17
0
13 Mar 2024
Accurate and interpretable drug-drug interaction prediction enabled by knowledge subgraph learning
Communications Medicine (Commun Med), 2023
Yaqing Wang
Zaifei Yang
Quanming Yao
216
43
0
25 Nov 2023
Emerging Drug Interaction Prediction Enabled by Flow-based Graph Neural Network with Biomedical Network
Nature Computational Science (Nat. Comput. Sci.), 2023
Yongqi Zhang
Quanming Yao
Ling Yue
Xian Wu
Ziheng Zhang
Zhenxi Lin
Yefeng Zheng
243
65
0
15 Nov 2023
Drug Interaction Vectors Neural Network: DrIVeNN
Na Wang
C. Taylor
82
1
0
26 Aug 2023
Predicting Drug-Drug Interactions Using Knowledge Graphs
Lizzy Farrugia
L. Azzopardi
Jeremy Debattista
C. Abela
161
2
0
08 Aug 2023
Comprehensive evaluation of deep and graph learning on drug-drug interactions prediction
Xuan Lin
Lichang Dai
Yafang Zhou
Zunpeng Yu
Wen Zhang
...
Li Zeng
Hao-Heng Chen
Bosheng Song
Philip S. Yu
Xiangxiang Zeng
GNN
190
89
0
08 Jun 2023
A Review on Knowledge Graphs for Healthcare: Resources, Applications, and Promises
Journal of Biomedical Informatics (JBI), 2023
Hejie Cui
Jiaying Lu
Shiyu Wang
Shiyu Wang
Wenjing Ma
...
Fei Wang
Carl Yang
Mengdi Huai
Fei Wang
Carl Yang
416
31
0
07 Jun 2023
BioBLP: A Modular Framework for Learning on Multimodal Biomedical Knowledge Graphs
Journal of Biomedical Semantics (JBS), 2023
Daniel Daza
Dimitrios Alivanistos
Payal Mitra
Thom Pijnenburg
Michael Cochez
Paul T. Groth
184
13
0
06 Jun 2023
BERT Based Clinical Knowledge Extraction for Biomedical Knowledge Graph Construction and Analysis
Computer Methods and Programs in Biomedicine Update (CMPB), 2021
Ayoub Harnoune
Maryem Rhanoui
M. Mikram
Siham Yousfi
Zineb Elkaimbillah
B. E. Asri
273
111
0
21 Apr 2023
Towards Unified AI Drug Discovery with Multiple Knowledge Modalities
Yi Luo
Xing Yi Liu
Kai Yang
Kui Huang
Massimo Hong
Jiahuan Zhang
Yushuai Wu
Zaiqing Nie
OffRL
172
6
0
17 Apr 2023
Catch Me If You Can: Semi-supervised Graph Learning for Spotting Money Laundering
Md. Rezaul Karim
Felix Hermsen
S. Chala
Paola de Perthuis
Avikarsha Mandal
339
6
0
23 Feb 2023
Knowledge-augmented Graph Machine Learning for Drug Discovery: A Survey from Precision to Interpretability
ACM Computing Surveys (ACM Comput. Surv.), 2023
Zhiqiang Zhong
A. Barkova
Davide Mottin
289
17
0
16 Feb 2023
A Biomedical Knowledge Graph for Biomarker Discovery in Cancer
Md. Rezaul Karim
Lina Molinas Comet
Oya Beyan
Dietrich-Rebholz Schuhmann
Stefan Decker
326
2
0
09 Feb 2023
Graph Regularized Probabilistic Matrix Factorization for Drug-Drug Interactions Prediction
bioRxiv (bioRxiv), 2022
Stuti Jain
Émilie Chouzenoux
Kriti Kumar
A. Majumdar
168
20
0
19 Oct 2022
Question Answering Over Biological Knowledge Graph via Amazon Alexa
Md. Rezaul Karim
Hussain Ali
Prinon Das
Mohamed Abdelwaheb
Stefan Decker
MedIm
AI4MH
171
5
0
12 Oct 2022
Graph Neural Networks for Molecules
Yuyang Wang
Zijie Li
A. Farimani
GNN
AI4CE
391
60
0
12 Sep 2022
DDI Prediction via Heterogeneous Graph Attention Networks
Farhan Tanvir
Khaled Mohammed Saifuddin
Esra Akbas
291
2
0
12 Jul 2022
Refining Diagnosis Paths for Medical Diagnosis based on an Augmented Knowledge Graph
Niclas Heilig
Janina Kirchhoff
Florian Stumpe
Joan Plepi
Lucie Flek
Heiko Paulheim
188
7
0
28 Apr 2022
Drug Similarity and Link Prediction Using Graph Embeddings on Medical Knowledge Graphs
Prakhar Gurawa
Matthias Nickles
75
3
0
22 Oct 2021
Medical Imaging with Deep Learning for COVID- 19 Diagnosis: A Comprehensive Review
Subrato Bharati
Prajoy Podder
M. Rubaiyat Hossain Mondal
V. B. Surya Prasath
191
42
0
13 Jul 2021
BERTChem-DDI : Improved Drug-Drug Interaction Prediction from text using Chemical Structure Information
Ishani Mondal
195
15
0
21 Dec 2020
SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summarization
Yue Yu
Kexin Huang
Chao Zhang
Lucas Glass
Jimeng Sun
Cao Xiao
299
163
0
04 Oct 2020
Drug-Drug Interaction Prediction with Wasserstein Adversarial Autoencoder-based Knowledge Graph Embeddings
Yuanfei Dai
Chenhao Guo
Wenzhong Guo
Carsten Eickhoff
BDL
144
2
0
15 Apr 2020
Classification Benchmarks for Under-resourced Bengali Language based on Multichannel Convolutional-LSTM Network
International Conference on Data Science and Advanced Analytics (DSAA), 2020
Md. Rezaul Karim
Bharathi Raja Chakravarthi
John P. Mccrae
Michael Cochez
313
90
0
11 Apr 2020
Knowledge-based Biomedical Data Science 2019
Annual Review of Biomedical Data Science (ARBDS), 2019
Tiffany J. Callahan
Harrison Pielke-Lombardo
Ignacio J. Tripodi
Lawrence E. Hunter
AI4CE
173
38
0
08 Oct 2019
NEAR: Neighborhood Edge AggregatoR for Graph Classification
ACM Transactions on Intelligent Systems and Technology (ACM TIST), 2019
Cheolhyeong Kim
Haeseong Moon
H. Hwang
GNN
281
7
0
06 Sep 2019
Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing
Md. Rezaul Karim
Michael Cochez
Achille Zappa
Ratnesh Sahay
Oya Beyan
Dietrich-Rebholz Schuhmann
Stefan Decker
136
0
0
30 May 2018
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