A Topological Loss Function for Deep-Learning based Image Segmentation using Persistent Homology

4 October 2019

Papers citing "A Topological Loss Function for Deep-Learning based Image Segmentation using Persistent Homology"

35 / 35 papers shown

Title
Topology-Aware CLIP Few-Shot Learning Dazhi Huang VLM 38 0 0 03 May 2025
Towards Scalable Topological Regularizers Hiu-Tung Wong Darrick Lee Hong Yan BDL 57 0 0 24 Jan 2025
Conformable Convolution for Topologically Aware Learning of Complex Anatomical Structures Yousef Yeganeh Rui Xiao Goktug Guvercin Nassir Navab Azade Farshad MedIm 40 0 0 31 Dec 2024
TopoTxR: A topology-guided deep convolutional network for breast parenchyma learning on DCE-MRIs Fan Wang Zhilin Zou N. Sakla Luke Partyka Nil Rawal ... Wei Zhao Haibin Ling Chuan Huang Prateek Prasanna C. L. P. Chen MedIm 21 3 0 05 Nov 2024
Topograph: An efficient Graph-Based Framework for Strictly Topology Preserving Image Segmentation Laurin Lux Alexander H. Berger Alexander Weers Nico Stucki Daniel Rueckert Ulrich Bauer Johannes C. Paetzold 34 2 0 05 Nov 2024
TopoDiffusionNet: A Topology-aware Diffusion Model Saumya Gupta Dimitris Samaras C. L. P. Chen DiffM 34 4 0 22 Oct 2024
TopoFR: A Closer Look at Topology Alignment on Face Recognition Jun Dan Y. Liu Jiankang Deng Haoyu Xie Siyuan Li Baigui Sun Shan Luo CVBM 29 4 0 14 Oct 2024
Devil is in Details: Locality-Aware 3D Abdominal CT Volume Generation for Self-Supervised Organ Segmentation Yuran Wang Zhijing Wan Yansheng Qiu Zheng Wang DiffM MedIm 29 0 0 30 Sep 2024
Centerline Boundary Dice Loss for Vascular Segmentation Pengcheng Shi Jiesi Hu Yanwu Yang Zilve Gao Wei Liu Ting Ma 37 8 0 01 Jul 2024
Self Pre-training with Topology- and Spatiality-aware Masked Autoencoders for 3D Medical Image Segmentation Pengfei Gu Yejia Zhang Huimin Li Chaoli Wang D. Z. Chen MedIm 60 1 0 15 Jun 2024
Three-dimensional numerical schemes for the segmentation of the psoas muscle in X-ray computed tomography images Giulio Paolucci I. Cama C. Campi Michele Piana 14 0 0 10 Dec 2023
Greedy Matroid Algorithm And Computational Persistent Homology Tianyi Sun Bradley J. Nelson 14 1 0 03 Aug 2023
Topology-Aware Loss for Aorta and Great Vessel Segmentation in Computed Tomography Images Seher Ozcelik S. Unver I. A. Gurses R. Turkay Cigdem Demir 13 1 0 06 Jul 2023
Topology-Aware Uncertainty for Image Segmentation Saumya Gupta Yikai Zhang Xiaoling Hu Prateek Prasanna Chao Chen 28 27 0 09 Jun 2023
Directional Connectivity-based Segmentation of Medical Images Ziyun Yang Sina Farsiu 30 36 0 31 Mar 2023
Importance attribution in neural networks by means of persistence landscapes of time series Aina Ferrà Carles Casacuberta O. Pujol AI4TS 50 4 0 06 Feb 2023
Topologically faithful image segmentation via induced matching of persistence barcodes Nicolas Stucki Johannes C. Paetzold Suprosanna Shit Bjoern H. Menze Ulrich Bauer 9 38 0 28 Nov 2022
The Fisher-Rao Loss for Learning under Label Noise Henrique K. Miyamoto Fábio C. C. Meneghetti Sueli I. R. Costa NoLa 13 5 0 28 Oct 2022
Learning with Limited Annotations: A Survey on Deep Semi-Supervised Learning for Medical Image Segmentation Rushi Jiao Yichi Zhang Leiting Ding Rong Cai Jicong Zhang 21 151 0 28 Jul 2022
BuyTheDips: PathLoss for improved topology-preserving deep learning-based image segmentation Minh On Vu Ngoc Yizi Chen Nicolas Boutry Jonathan Fabrizio Clement Mallet 26 1 0 23 Jul 2022
A Primer on Topological Data Analysis to Support Image Analysis Tasks in Environmental Science Lander Ver Hoef Henry Adams E. King I. Ebert‐Uphoff 32 17 0 21 Jul 2022
Learning Topological Interactions for Multi-Class Medical Image Segmentation Saumya Gupta Xiaoling Hu James H. Kaan Michael Jin M. Mpoy ... Tahsin M. Kurc Joel H. Saltz A. Tassiopoulos Prateek Prasanna Chao Chen 16 42 0 20 Jul 2022
Enforcing connectivity of 3D linear structures using their 2D projections Doruk Öner Hussein Osman Mateusz Koziñski Pascal Fua 27 5 0 14 Jul 2022
Learning Probabilistic Topological Representations Using Discrete Morse Theory Xiaoling Hu Dimitris Samaras Chao Chen 16 20 0 03 Jun 2022
DTU-Net: Learning Topological Similarity for Curvilinear Structure Segmentation Manxi Lin Zahra Bashir M. Tolsgaard Anders Christensen Aasa Feragen MedIm 22 12 0 23 May 2022
Persistent Homology with Improved Locality Information for more Effective Delineation Doruk Öner A. Garin Mateusz Koziñski K. Hess Pascal Fua 42 7 0 12 Oct 2021
Stop Throwing Away Discriminators! Re-using Adversaries for Test-Time Training Gabriele Valvano Andrea Leo Sotirios A. Tsaftaris TTA 25 8 0 26 Aug 2021
TEDS-Net: Enforcing Diffeomorphisms in Spatial Transformers to Guarantee Topology Preservation in Segmentations M. K. Wyburd Nicola K. Dinsdale Ana I. L. Namburete M. Jenkinson MedIm 11 16 0 28 Jul 2021
A persistent homology-based topological loss for CNN-based multi-class segmentation of CMR Nicholas Byrne J. Clough I. Valverde Giovanni Montana A. King 28 25 0 27 Jul 2021
Recent advances and clinical applications of deep learning in medical image analysis Xuxin Chen Ximing Wang Kecheng Zhang K. Fung T. Thai K. Moore Robert S. Mannel Hong Liu B. Zheng Y. Qiu OOD 18 569 0 27 May 2021
A survey on shape-constraint deep learning for medical image segmentation Simon Bohlender Ilkay Oksuz Anirban Mukhopadhyay 3DV 14 34 0 19 Jan 2021
High-level Prior-based Loss Functions for Medical Image Segmentation: A Survey Rosana El Jurdia Caroline Petitjean P. Honeine V. Cheplygina F. Abdallah SSeg MedIm 25 79 0 16 Nov 2020
Deep Small Bowel Segmentation with Cylindrical Topological Constraints Seung Yeon Shin Sungwon Lee Daniel C. Elton J. Gulley Ronald M. Summers 6 24 0 16 Jul 2020
Fast and Scalable Complex Network Descriptor Using PageRank and Persistent Homology Mustafa Hajij E. Munch Paul Rosen 13 2 0 12 Feb 2020
A Survey on Deep Learning in Medical Image Analysis G. Litjens Thijs Kooi B. Bejnordi A. Setio F. Ciompi Mohsen Ghafoorian Jeroen van der Laak Bram van Ginneken C. I. Sánchez OOD 280 10,613 0 19 Feb 2017