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FastSurfer -- A fast and accurate deep learning based neuroimaging pipeline

NeuroImage (NeuroImage), 2019

9 October 2019

Papers citing "FastSurfer -- A fast and accurate deep learning based neuroimaging pipeline"

50 / 100 papers shown

Title
Privacy Protection in MRI Scans Using 3D Masked AutoencodersInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2023 Lennart Alexander Van der Goten Kevin Smith MedIm 130 0 0 24 Oct 2023
SHARM: Segmented Head Anatomical Reference ModelsBiomedical Signal Processing and Control (BSPC), 2023 E. Rashed M. Al-Shatouri I. Laakso A. Hirata 76 0 0 13 Sep 2023
FastSurfer-HypVINN: Automated sub-segmentation of the hypothalamus and adjacent structures on high-resolutional brain MRI Santiago Estrada David Kügler Emad Bahrami Pengda Xu Dilshad Mousa M. Breteler N. Aziz M. Reuter 150 11 0 24 Aug 2023
Deepbet: Fast brain extraction of T1-weighted MRI using Convolutional Neural Networks L. Fisch Stefan Zumdick Carlotta B. C. Barkhau D. Emden J. Ernsting ... K. Sarink N. Winter Benjamin Risse U. Dannlowski Tim Hahn 136 8 0 14 Aug 2023
Brain MRI Segmentation using Template-Based Training and Visual Perception Augmentation F. Yeh 107 1 0 04 Aug 2023
Hybrid-CSR: Coupling Explicit and Implicit Shape Representation for Cortical Surface Reconstruction Shanlin Sun Thanh-Tung Le Chenyu You Hao Tang Kun Han Haoyu Ma Deying Kong Xiangyi Yan Xiaohui Xie 3DV 121 4 0 23 Jul 2023
CortexMorph: fast cortical thickness estimation via diffeomorphic registration using VoxelMorphInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2023 Richard McKinley C. Rummel 79 4 0 21 Jul 2023
Arbitrary Reduction of MRI Inter-slice Spacing Using Hierarchical Feature Conditional Diffusion Xin Wang Zhenrong Shen Zhiyun Song Sheng Wang Mengjun Liu Lichi Zhang Kai Xuan Qian Wang MedIm 160 5 0 16 Apr 2023
Automated computed tomography and magnetic resonance imaging segmentation using deep learning: a beginner's guide Diedre Carmo G. Pinheiro Lívia Rodrigues Thays Abreu R. Lotufo Letícia Rittner OOD 152 4 0 12 Apr 2023
Exploring contrast generalisation in deep learning-based brain MRI-to-CT synthesisPhysica medica (Testo stampato) (PMTS), 2023 Lotte Nijskens Cornelis C. D. Berg Joost Verhoeff M. Maspero OOD MedIm 118 9 0 17 Mar 2023
Evidence-empowered Transfer Learning for Alzheimer's DiseaseIEEE International Symposium on Biomedical Imaging (ISBI), 2023 Kai Tzu-iunn Ong Hana Kim Minjin Kim Jinseong Jang B. Sohn Y. Choi D. Hwang Seong Jae Hwang Jinyoung Yeo MedIm 158 5 0 02 Mar 2023
Improved Segmentation of Deep Sulci in Cortical Gray Matter Using a Deep Learning Framework Incorporating Laplace's EquationInformation Processing in Medical Imaging (IPMI), 2023 S. Ravikumar Ranjit Itttyerah Sydney A. Lim L. Xie Sandhitsu R. Das ... C. Rosa-Prieto Marta Córcoles Parada David A. Wolk R. Insausti Paul Yushkevich 105 1 0 01 Mar 2023
Improving Uncertainty-based Out-of-Distribution Detection for Medical Image Segmentation Benjamin Lambert Florence Forbes Senan Doyle A. Tucholka M. Dojat UQCV OOD 194 5 0 10 Nov 2022
Learning Spatio-Temporal Model of Disease Progression with NeuralODEs from Longitudinal Volumetric DataIEEE Transactions on Medical Imaging (IEEE TMI), 2022 Dmitrii Lachinov A. Chakravarty C. Grechenig U. Schmidt-Erfurth Hrvoje Bogunović 114 25 0 08 Nov 2022
Fighting the scanner effect in brain MRI segmentation with a progressive level-of-detail network trained on multi-site data M. Svanera Mattia Savardi A. Signoroni Sergio Benini L. Muckli 244 11 0 04 Nov 2022
A Clinical Dataset for the Evaluation of Motion Planners in Medical Applications Inbar Fried Jason A. Akulian Ron Alterovitz 112 3 0 19 Oct 2022
Joint Reconstruction and Parcellation of Cortical Surfaces Anne-Marie Rickmann Fabian Bongratz Sebastian Polsterl Ignacio Sarasua Christian Wachinger 3DV 126 1 0 19 Sep 2022
Estimating Brain Age with Global and Local DependenciesInternational Conference on Information Photonics (ICIP), 2022 Yanwu Yang Xutao Guo Zhikai Chang Hanyang Peng Yang Xiang Haiyan Lv Ting Ma 195 2 0 19 Sep 2022
Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration Yiwen Li Yunguan Fu Iani J. M. B. Gayo Qianye Yang Zhe Min ... Matthew J. Clarkson Henkjan J. Huisman D. Barratt V. Prisacariu Yipeng Hu 163 18 0 12 Sep 2022
Self-supervised multimodal neuroimaging yields predictive representations for a spectrum of Alzheimer's phenotypes A. Fedorov Eloy P. T. Geenjaar Lei Wu Tristan Sylvain T. DeRamus Margaux Luck Maria B. Misiura R. Devon Hjelm Sergey Plis Vince D. Calhoun 113 3 0 07 Sep 2022
Robust machine learning segmentation for large-scale analysis of heterogeneous clinical brain MRI datasetsProceedings of the National Academy of Sciences of the United States of America (PNAS), 2022 Benjamin Billot C. Magdamo You Cheng S. Arnold Sudeshna Das Juan Eugenio Iglesias 275 154 0 05 Sep 2022
FAST-AID Brain: Fast and Accurate Segmentation Tool using Artificial Intelligence Developed for BrainScandinavian Conference on Image Analysis (SCIA), 2022 Mostafa Mehdipour-Ghazi Mads Nielsen OOD 172 14 0 30 Aug 2022
A Study of Demographic Bias in CNN-based Brain MR Segmentation Stefanos Ioannou Hana Chockler A. Hammers A. King 93 22 0 13 Aug 2022
Identifying and Combating Bias in Segmentation Networks by leveraging multiple resolutionsInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2022 Leonie Henschel David Kügler D. Andrews C. Nordahl M. Reuter 179 0 0 29 Jun 2022
Automatic autism spectrum disorder detection using artificial intelligence methods with MRI neuroimaging: A reviewFrontiers in Molecular Neuroscience (Front. Mol. Neurosci.), 2022 Parisa Moridian Navid Ghassemi M. Jafari S. Salloum-Asfar Delaram Sadeghi ... A. Subasi R. Alizadehsani Juan M Gorriz Sara A. Abdulla U. Acharya 218 91 0 20 Jun 2022
$CorticalFlow$^{++}$: Boosting Cortical Surface Reconstruction Accuracy, Regularity, and Interoperability$ CorticalFlow $^{++}$ : Boosting Cortical Surface Reconstruction Accuracy, Regularity, and InteroperabilityInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2022 Rodrigo Santa Cruz Leo Lebrat D.-L. Fu Pierrick Bourgeat Jurgen Fripp Clinton Fookes Olivier Salvado 100 24 0 14 Jun 2022
EVAC+: Multi-scale V-net with Deep Feature CRF Layers for Brain Extraction Jong Sung Park S. Fadnavis Eleftherios Garyfallidis 241 0 0 06 Jun 2022
CorticalFlow: A Diffeomorphic Mesh Deformation Module for Cortical Surface Reconstruction Leo Lebrat Rodrigo Santa Cruz Frédéric de Gournay Darren Fu Pierrick Bourgeat Jurgen Fripp Clinton Fookes Olivier Salvado 3DH 120 9 0 06 Jun 2022
Spatial Attention-based Implicit Neural Representation for Arbitrary Reduction of MRI Slice Spacing Xin Wang Sheng Wang Honglin Xiong Kai Xuan Zixu Zhuang Mengjun Liu Zhenrong Shen Xiangyu Zhao Lichi Zhang Qian Wang 188 6 0 23 May 2022
DeeptDCS: Deep Learning-Based Estimation of Currents Induced During Transcranial Direct Current StimulationIEEE Transactions on Biomedical Engineering (IEEE TBME), 2022 Xiaofan Jia S. B. Sayed N. Hasan Luis J. Gomez G. Huang A. Yucel 109 6 0 04 May 2022
Vox2Cortex: Fast Explicit Reconstruction of Cortical Surfaces from 3D MRI Scans with Geometric Deep Neural NetworksComputer Vision and Pattern Recognition (CVPR), 2022 Fabian Bongratz Anne-Marie Rickmann Sebastian Polsterl Christian Wachinger 3DV 164 45 0 17 Mar 2022
CortexODE: Learning Cortical Surface Reconstruction by Neural ODEsIEEE Transactions on Medical Imaging (IEEE TMI), 2022 Qiang Ma Liu Li E. C. Robinson Bernhard Kainz Daniel Rueckert A. Alansary MedIm 188 46 0 16 Feb 2022
FastSurferVINN: Building Resolution-Independence into Deep Learning Segmentation Methods -- A Solution for HighRes Brain MRINeuroImage (NeuroImage), 2021 Leonie Henschel David Kügler M. Reuter 300 62 0 17 Dec 2021
Whole Brain Segmentation with Full Volume Neural Network Yeshu Li Jianwei Cui Yilun Sheng Xiao Liang Jingdong Wang E. Chang Yan Xu 238 15 0 29 Oct 2021
DBSegment: Fast and robust segmentation of deep brain structures -- Evaluation of transportability across acquisition domains Mehri Baniasadi Mikkel V Petersen J. Gonçalves A. Horn Vanja Vlasov F. Hertel A. Husch OOD 180 1 0 18 Oct 2021
Gray Matter Segmentation in Ultra High Resolution 7 Tesla ex vivo T2w MRI of Human Brain Hemispheres Pulkit Khandelwal S. Sadaghiani Michael Tran Duong S. Ravikumar Sydney A. Lim ... M. Tisdall Sandhitsu R. Das L. Wisse David A. Wolk Paul Yushkevich 335 4 0 14 Oct 2021
Axial multi-layer perceptron architecture for automatic segmentation of choroid plexus in multiple sclerosisbioRxiv (bioRxiv), 2021 Marius Schmidt-Mengin Vito A G Ricigliano B. Bodini E. Morena A. Colombi Mariem Hamzaoui Arya Yazdan Panah B. Stankoff O. Colliot 79 15 0 08 Sep 2021
Automated Olfactory Bulb Segmentation on High Resolutional T2-Weighted MRINeuroImage (NeuroImage), 2021 Santiago Estrada Ran Lu K. Diers W. Zeng P. Ehses T. Stöcker M. Breteler M. Reuter 122 12 0 09 Aug 2021
Challenges for machine learning in clinical translation of big data imaging studies Nicola K. Dinsdale Emma Bluemke V. Sundaresan M. Jenkinson Stephen Smith Ana I. L. Namburete AI4CE 183 61 0 07 Jul 2021
DeepCSR: A 3D Deep Learning Approach for Cortical Surface Reconstruction Rodrigo Santa Cruz Leo Lebrat Pierrick Bourgeat Clinton Fookes Jurgen Fripp Olivier Salvado 3DV MedIm 100 59 0 22 Oct 2020
Influence of segmentation accuracy in structural MR head scans on electric field computation for TMS and tESPhysics in Medicine and Biology (PMB), 2020 E. Rashed J. Gómez-Tames A. Hirata 279 11 0 25 Sep 2020
Learning Anatomical Segmentations for Tractography from Diffusion MRI Christian Ewert David Kügler A. Yendiki M. Reuter MedIm 102 1 0 09 Sep 2020
Going deeper with brain morphometry using neural networksIEEE International Symposium on Biomedical Imaging (ISBI), 2020 Rodrigo Santa Cruz Leo Lebrat Pierrick Bourgeat Vincent Doré Jason Dowling Jurgen Fripp Clinton Fookes Olivier Salvado 3DV MedIm 47 7 0 07 Sep 2020
Multi-modal segmentation of 3D brain scans using neural networksFrontiers in Neurology (Front. Neurol.), 2020 Jonathan Zopes Moritz Platscher S. Paganucci C. Federau 204 12 0 11 Aug 2020
MeDaS: An open-source platform as service to help break the walls between medicine and informatics Liang Zhang Johann Li Ping Li Xiaoyuan Lu Peiyi Shen Guangming Zhu Syed Afaq Ali Shah Bennamoun Kun Qian Björn W. Schuller MedIm 200 6 0 12 Jul 2020
Deep Learning for Neuroimaging-based Diagnosis and Rehabilitation of Autism Spectrum Disorder: A Review Marjane Khodatars A. Shoeibi Delaram Sadeghi Navid Ghaasemi M. Jafari ... Abbas Khosravi S. Nahavandi Sadiq Hussain U. Acharya M. Berk 305 229 0 02 Jul 2020
DeepRetinotopy: Predicting the Functional Organization of Human Visual Cortex from Structural MRI Data using Geometric Deep LearningNeuroImage (NeuroImage), 2020 Fernanda L. Ribeiro S. Bollmann A. M. Puckett MedIm 177 22 0 26 May 2020
Cortical surface registration using unsupervised learningNeuroImage (NeuroImage), 2020 Jieyu Cheng Adrian Dalca Bruce Fischl Lilla Zöllei 214 37 0 09 Apr 2020
AssemblyNet: A large ensemble of CNNs for 3D Whole Brain MRI SegmentationNeuroImage (NeuroImage), 2019 Pierrick Coupé Boris Mansencal Michael Clement Rémi Giraud B. D. D. Senneville T. Thong Vincent Lepetit J. V. Manjón 285 156 0 20 Nov 2019
DeepNAT: Deep Convolutional Neural Network for Segmenting Neuroanatomy Christian Wachinger M. Reuter T. Klein 3DV 543 339 0 27 Feb 2017